RNA id: XM_022674912.1


Basic Information

Item Value
RNA id XM_022674912.1
length 1869
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC103041889
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23434867 ~ 23439103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACAGCTGCTCATTCTTCTGGAGGGCAGCAGAGAGACGGAGGGAGATTTgaagagagagaatATGTTTGACCTGGATAAAATTGACTTTTCTGCTCTAATGGCGAAACCAAAAGGCACAAAGGTGTTTGTGCCTGATAAATGTAAGGTGCAGGTCTTCCGGGGCAAACTGGGACAGAGTCTTTCTCCTGATAAACAGGATTATGACTTCGGAGACCCTAAAATGCCCAAGAAACTCGGGGAATACAACTGCCTGCACGATAAATACTTGAAGAAGTTCTTCAGACATCCGGAGAAAAAGAAACAGCTCATAAAACTTGGCATAATTTCTCGggatggaaaagtcCGGTGCTCCGTAAAGGAGTTTAACGAATACGTTGAGCACCTGAAGGACACCCCACTGAAACAGGATACATCAAAAATCAAGCAGCCCAGCTTACAAATGACCTGCCGGTGGAAGGGTTCCAGCCGCCCGGAGAAGAAGATGAAGAAAGAGACTGAGGAGCTGAGGCTGATAGACCTGGAGGAGGAGGTTCATGTTTCAGTTGAGGACCTAAAACAAACTCCTAGAGAAGAAAAGGTGGAGGATACAACAGAATTCAAGCAGCCCAGCTTACAAATGACCTGCCAGAGCAAGGGCTCCAGCCGCCCGGAGAAGAAGAAGCGGCGCATGAAACAAAAACGAACCGTTCAGGAAAAGAAAGAACGTACATTACTCGCACAATCCCACACATTAGAGCGTGATGATGATCAGGTTTATGATTTCAAAACTGAAAAAGAGCCCGAGGAGCTGCGGCTGATAGACCtcgaggaggagcaggaggaggagcagagCTTCCAAACCGAGGTGGCTGATGTTTCAGTGGAGGATATAGACcaaactcctaaagaagaaacgGTGGAGATGACAACATCAAAGCCAATCCTCCCACTCGAAACTGAGACGcacctgaagaaaaagaaatctttGACTCGGATAAATGTCCAAGAGCCATCCAGCACCTGGGAGAAAATGGAGGAAACTTCTGAAGAGGGTGACAGCCGAGGCTCCATCTGGTCCATCTTCAAGAGAGTCTGGAAGGCAGTAAAGCGCCCCAAATCAGCTCCTCCTGCCATCTAAATTTCCCCATTTTCCCCATTCACCACCCCCCCCTTTCacttcttttttatattaatcataTGATTTGGTCAACGCTATCCATATTAATCTATTGTATTGTATCAAATTATCCGCCATATTGTTCGCCATAAATTCGCAACCGTCTGGAGCGCATATTAATAGCGGCCCCCTGATGCCCCCAAATCTACATCTACAATTAAAGATTGCAGTGTGACGCTGCAGCAAAAGTAAGACTGAGAGTGCATCCTGATTGGTCCCTGCTTGGGCTTGGATCTGTCAATGAGCACATGTGGGAGCGATTTAGGCTCCACAGCTCTCTTTCTAGGCTAGAATATTCTAGTTTAGTTTCCTTTCTGCAGTATAAAGGTAATAAGataattttatattgtataggTATTGTAGATGATTTGCAGGCATCAGGAAGCAAACatataaaaaactgtttatgtgGTCTTAAAGTCACGTCATATCATGTATTAGTCATATGTGGTttagaccagaggaggatgggtcccccttGTGAAGCCTGGTTCCTCCTGAGGTTTCTTCCTACAGGGGAGTTTTTCCTCACCACTGTCGACTTGGGCTTGCTCACTTGGGGTTACGTGTTTAGTAAAAATCACTAGACTAATAAACGCGTGATGTGACGTGACTTTAAAGAAACCACATAACAGCGAATGCAGCCTTGACCAAATCATATCATTAACGCTCACcacccaaaaaaataataaacattttaaaatatattaa

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143036 lncRNA upstream 22823 23411283 ~ 23412044 (+) True G105879
TU143025 lncRNA upstream 37005 23390733 ~ 23397862 (+) True G105872
TU142943 lncRNA upstream 183051 23179282 ~ 23251816 (+) True G105804
TU142941 lncRNA upstream 199815 23178637 ~ 23235052 (+) True G105803
TU142940 lncRNA upstream 280079 23154435 ~ 23154788 (+) True G105802
TU143048 lncRNA downstream 6771 23445874 ~ 23453226 (+) True G105891
TU143074 lncRNA downstream 54972 23494075 ~ 23496556 (+) True G105906
TU143125 lncRNA downstream 141052 23580155 ~ 23583983 (+) False G105940
TU143123 lncRNA downstream 141125 23580228 ~ 23586217 (+) True G105940
TU143170 lncRNA downstream 209327 23648430 ~ 23648659 (+) True G105974
XM_007260282.2 mRNA upstream 24849 23400271 ~ 23410018 (+) True cacng3
XM_022674908.1 mRNA upstream 44422 23313634 ~ 23390445 (+) False prkcb
XM_022674907.1 mRNA upstream 54148 23313643 ~ 23380719 (+) True prkcb
XM_022674909.1 mRNA upstream 61249 23313632 ~ 23373618 (+) False prkcb
XM_022674906.1 mRNA upstream 129711 23292193 ~ 23305156 (+) True LOC103044794
XM_015602690.2 mRNA downstream 15353 23454456 ~ 23459515 (+) True LOC107197111
XM_015602691.2 mRNA downstream 16023 23455126 ~ 23459515 (+) False LOC107197111
XM_007238135.3 mRNA downstream 41353 23480456 ~ 23490205 (+) True plk1
XM_007238137.3 mRNA downstream 85613 23524716 ~ 23552698 (+) True chtf18
XM_022674913.1 mRNA downstream 85613 23524716 ~ 23546008 (+) False chtf18
XR_002650601.1 other upstream 614771 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 2066614 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 2405877 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 2442055 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 4511664 18919060 ~ 18923203 (+) True G104656
TU143216 other downstream 476532 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 548104 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 972105 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 1922641 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 1922641 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile