RNA id: XM_022674918.1


Basic Information

Item Value
RNA id XM_022674918.1
length 3728
RNA type mRNA
GC content 0.49
exon number 10
gene id gpc6
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23970691 ~ 24115461 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtggtgtgtgtgtgtgagtgtgtgttctgcGATGAAGCGGTGAGGATTGTTCCCACGTGGAGTAGATTTTTGGAGCTCGCGGACCCCCGgagcaggagtgtgtgtgtgtgtgtgtgtgtgtgtgaggatgcAGGTGTCggtgctgctgtgtgtgggtgtgtgtgtggtgagtgtgtgtgcggagGGGAAGTGGAGGAGCTTCGGGGAGGTGCGCGAGGCTTACAGCGCGCTGGGCTTCAGCCTGAACACCGCACCACAGCACGAGATcgcaggtgagCACCTGCGAGTTTGTGCTCGGGGACAAACCTGCTGCAGCTCAGAGATGGAGGATAAGCTGGGGGTGCAGAGTAAGGTGAAGCTGGAGGGGATGGTGGAGGAGTCCAGTGACGTCCTGCGCTCCACCTTCTTCTCCAGGCACAAGAAGTTTGATGAGTTCTTCCTGGAGCTGCTAGATAACTCAGAGAAGTCACTGAACGACATGTTTGTGCGGACGTACGGGAAGCTGTACACGCACAACTCGGAGATCTTTGAGGACCTGTTCTCGGAGCTGAAACGCTACTACACCGGCGGGAACGTCAACCTCGAGGAGATGCTGAACGACTTCTGGTCACGCCTTCTGGAGAGGATGTTCCAGCTGCTGAACTCGCAGTACACCTTCACCGACGACTATCTGGAGTGTATCAGCAAGTACACGGACCAGCTAAAGCCCTTCGGAGACATCCCGCGGAAACTGAAGGCTCAGGTGACCCGCGCCTTCATCGCCGCCAGGACCTTCGTCCAGGGTCTCATGGTTGGGCGGGAGGTGGCCAACAGGGTGTCGAAGGTGAACGTGTCTCCAGGCTGCAGTAAGGCTCTGACCCGGATGCTGTACTGCCCGTACTGCGGCGGGCTGCCCGGACTGCGACCCTGCGGGAATTACTGCCAGAACGTTATGAAGGGCTGCCTCGCCAACCAGGCCGACCTGGACCCCGAGTGGAACCTGTTCATCGatgcgATGCTGCTGGTTGCCGAGCGACTGGAGGGACCCTTTAACATTGAGGCGGTGATGGAGCCCATCGACGTGAAGATCTCAGAGGCCATCATGACCATGCAGGACAACAGCATGCAGGTCTCAGCcaagGTGTTTCAGGGATGTGGTCATCCGAAGCCGGCCGGACTGAGCCGGACGTCCCGCGGGATCTCGGAAAAGGGTTTTAACACTCGTTTCCGACCGTACAGCCCAGAGGAGCGTCCCACCACCGCCGCCGGGACCAGCCTGGACCGACTGAGGAATGTGTGGAGAACAATGCAGAACAGCgttATTGATATTAAAGAAACTCTAAAGAAGTCTAAGAAGTTTTGGTCAACTCTGCCGGATGCCGTCTGCAGCCGGGAGCGGGTCAGTGATGACGAcgagcagtgctggaacagccACGCTAAAGGAAGGTATTTCCCGGAGGTGGTGAAGGACGGATTGACGGGTCAGCTGAATAACCCGGAGGTGGAAGTGGACATCACCCGGCCGGATACGTTCATCAGGCAGCAGATCATGGCCCTCAGAGTGATGACCAACAAACTCCGCAACGCCTACAACGGCAACGACATCTACTTCCAGGACTCCAGTGACGAGGGCAGCGGATCGGGCAGCGGCAGCGGCTGCACTGAAGGATGCACCACTGAGTATGACTTCGTCGCTACAGAGGCACCGGTGGTGGAGGCGGACCGAAGCGACCCCCGACCCGCCACTGACAACGCCGGCCTCCGCGGCCACGCCCCGCCTCCGCCCTGCCAACTGGCGGCGATAGCCGGcattctgctgctgctactgtggCAGTGGAGATAATGGGGTGTGTGGAGGGGCGTGGCCTATGACTTTATTAGGACACAGCACAGCTCCTCCTTCACTGTCGAGTAGCCACGCCCCATTCGGGGACATGGGGGCAGGGCTTGTTACAGACTGAAAACCCTGGGGATTAAAAAGGTGACGgaaagtgaaagagagcgataaaaggagagagagggatatgAGAAATCTCTGCATCTCACTCGTCCTGAAAAACAACACTGAAGGAAGGCAGAATAAAAGTCCCCGGGTGCAGGAGACAGTCAGCAGCACGTTCCTCGAAATCCCTTTCAACAAGGGAGAGATACctgaaaacaacaacaacaacagagaagatgaagaagagtctatttttgttttttataaaccgtgcaaaaaaaaaaagaaaagaaaaaaagataaaacctGCAGTCtgatgttttctgtgtttttccgcCTCTTCTGAAACCCGACGTCGGAGATGAAAACGCAGAGACATGAAGGAGGACGGCATGAAAAGAGCAGCGTATGAATCAGATTGGCTCCTGTGCCGCACTGTGAACGCATGCAGTCGTACGCTCCGCGTCCAATCAACTTCCAGCTTTCATCCGCCCAGACGCATCCCTCCTCACTTTCACACAAATTCACTTTTCTGACAGATTTCATCCCACACTTCCTCCCACGACCTGCAGGAGAACTTCACTTAAAATTACACTAAACCAGGTATCAGGATGATCACATGACCCCAGATTCAGTAGATCTCAGTCTAGCAATCTCTAATCAACCACAACCCGAACATGAGGCCGCGGTTCAATTCCTGCTCTGGATGACTGTGCTGATTTACACCAacacaccaataagagtcctcctctttaatataattaactTTACATCAGTCTGAAGAGGAGAGACAGGTTAATCCcctaaacaagtttaaatttaCACGATTATtatctaacgtttatattatTGTATCTCTGATCTGAcgtggacacacccctaaaaactttaaaaaggatCCGGAAAAACTTAAACATCAGATCAAAACGTTAGTTGTTTAGGATAGAAACTTTATATTAAGTTTCCGAGGCAGTTAAAACACTCCAGACGATAGAGGGGCGATAGAGGACAAATCATATTGTGGCTGTCTCTCTCTAGTAGCGTCCCCTCGTGGTGATGTTCAGAATACAGCTTGCACTTGTTGTGCTTTAAATTGTAAACCGTTTTAATTGTAGCTACATGTGAAAACCATTCAGTGTATGTAGTTTAACACGTCTACGTTAATGACCCTGGAGGAACCGGAACTATTTTTACCTCAGGACAGTGTGTGATATCACTCCGCCCCCTGTGCTTTAGTCTGAATGTGGAACAGAGCACAACGTTATTAATATAACTGTATGATAATGTATTTCCGGTTCTGGATTCAGTGTGGAGAATATGGTGGGTAATTTACTAAACCCAAGAATTAAAAtagatttctttttaatttaaagatgTAAAGATTTTAGGGGTGTGACTACAGAGATGAGTAAACGGATAACAGTTTAAGTCCAGTTTTTGTTAGCAACATTAATCTAGCATCACACACATCAGATACCAAACCCGCCTCAGCTGATCGACTGAATCTGGATCAGTGATCAATTATATTTATGCTAATTATGGTAATTATGGGTATAGTTTTTAACCAATCCGTCCCTTTATTTATCCACAGATTTTACTTTATTAGATGTGTTTTTTGTTCCTTATAAGTgaaaaagatttatttatatttctaatataaTTCTATATTTTGCTTTTAGCAGTTAGCAGATTTTTATCTGATATATATGCACAGATTTATCTCTCGCTAAaaacagacttttattttgtcttttatttatttcagctcatgtttttttccccttttaaaaataaaatgtcagtat

Function

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG:

id description
K08112 GPC6; glypican 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143221 lncRNA upstream 37518 23932834 ~ 23933173 (+) True G106022
TU143201 lncRNA upstream 80607 23870412 ~ 23890084 (+) True G106003
TU143186 lncRNA upstream 236909 23733421 ~ 23733782 (+) True G105990
TU143180 lncRNA upstream 281317 23689146 ~ 23689374 (+) True G105984
TU143170 lncRNA upstream 322032 23648430 ~ 23648659 (+) True G105974
TU143230 lncRNA downstream 4319 24119780 ~ 24120495 (+) True G106026
TU143328 lncRNA downstream 5511 24120972 ~ 24121204 (+) True G106101
TU143388 lncRNA downstream 392551 24508012 ~ 24508429 (+) True G106155
TU143390 lncRNA downstream 393081 24508542 ~ 24509393 (+) True G106157
TU143407 lncRNA downstream 422100 24537561 ~ 24537817 (+) True G106172
XM_007238141.3 mRNA upstream 331803 23632379 ~ 23638888 (+) True LOC103035907
XM_007238137.3 mRNA upstream 417993 23524716 ~ 23552698 (+) True chtf18
XM_022674913.1 mRNA upstream 424683 23524716 ~ 23546008 (+) False chtf18
XM_007238135.3 mRNA upstream 480486 23480456 ~ 23490205 (+) True plk1
XM_015602690.2 mRNA upstream 511176 23454456 ~ 23459515 (+) True LOC107197111
XM_007232254.3 mRNA downstream 961475 25076936 ~ 25102573 (+) True slitrk6
XM_022674360.1 mRNA downstream 1257345 25372806 ~ 25374832 (+) True LOC103022503
XM_015607967.2 mRNA downstream 1267411 25382872 ~ 25386300 (+) True LOC103023109
XM_022674930.1 mRNA downstream 1304079 25419540 ~ 25422258 (+) True LOC111193564
XM_022674361.1 mRNA downstream 1308251 25423712 ~ 25449279 (+) True LOC103025458
TU143216 other upstream 46920 23915635 ~ 23923771 (+) True G106017
XR_002650601.1 other upstream 1150595 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 2602438 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 2941701 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 2977879 20989273 ~ 20992812 (+) True G105276
TU143375 other downstream 295747 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 1246283 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 1246283 25361744 ~ 25369439 (+) False LOC111193563
TU144092 other downstream 3899055 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 3950891 28066352 ~ 28066983 (+) True G106673

Expression Profile