RNA id: XM_022674939.1


Basic Information

Item Value
RNA id XM_022674939.1
length 1617
RNA type mRNA
GC content 0.56
exon number 13
gene id atic
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 27588049 ~ 27604231 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCCCATGATGCCCCTGGTGCGCGAGGCTGGTGTGATTAGCTGCAGCGTGTCCTGCTCTTCCCTCTCTTGTGTgagtgaacagcagcagcatggCCTCTGAACTTGCCGTTCTCAGTGTGTCTGATAAGACTGGGCTGCTGGATTTCGCTAAGCGGCTGGTGGCGGTGGGGCtgaatctggtggcttctggaGGAACAGCCAAAACCCTGAGGGATGCCGGCCTTACCGTCAGAGATGTGTCTGAGCTCACCGGGTTCCCGGAGATGCTGGGGGGCCGAGTTAAGACCCTCCACCCTGCTGTTCATGGCGGCATCCTGGCCAGACACTCGCCGTCCGATCAGGCAGACATGGAGAAACTGGGCTTCAGTTTAGTGAGggtgGTGGTGTGTAACCTGTATCCGTTTGTGAAGACGGTGGCGTCTCCGAACGTAACCGTGGCAGATGCTGTGGAGCAAATCGACATTGGTGGCGTCACTCTCCTCCGAGCGGCGGCCAAAAACCACGCCCGAGTGACCATCGTCTGCGATCCGTCTGATTACGACCTGATTGCCAAGGAGATGGAGTCATCCGGTAACCATGACACCAGCCTGGACACCCGCAAGACTCTGGCTCTTAagGCGTTCACTCACACGGCTCAGTACGACGAGGCGATCGCTGATTATTTCCGGCGTGAGTACAGCGGCGGAGTCTCTCAGCTTCAGCTCCGCTACGGCATGAACCCTCACCAAGCTCCCGCCCAGATTTACACCTTACGCCCCGCCCTGCCGCTCACAGtgctgaACGGTTCTCCGGGGTTTATTAATCTGTGTGATGCTCTGAATGCCTGGCAGTTGGTGCGAGAGCTGAAGAGCGCTCTGGGTTTACCTGCAGCCACGTCCTTCAAACACGTCAGTCCTGCAGGTGCTGCGGTTGGTGTAGCTCTAAGTGAGGAGGAAGCTAAGGTGTGTATGGTGCACGACATGCTGAAGGACCTCACACCACTCGCCACCGCCTACGCCCGGGCCagagGTGCAGACAGGATGTCGTCTTTCGGAGATTTCATCGCTCTCTCTGACCCCTGTGACGTTCCGACCGCTAAGATAATCTCCAGAGAGGTGTCGGATGGTATAATCGCCCCGGCGTATGATGAGGAGGCTCTTCGGATTCTCTCTAAAAAGAAGAACGGCAACTACTGTGTCCTCCAGATGGATCCGGAGTATGAGCCGGATGAGCAGGAGGTTCGGGTTCTTTTCGGACTTCATCTCAAACAAAAGAGGAACAACGCTGTCATCGATAAAGAGCTTTTCAGCAACATCGTCTCTAAAGGAACGCTGTCTGAGAAAGCTCTGCAGGATCTGATCGTGGCCACCATCGCTGTGAAGTTCACCCAGTCCAACTCCGTGTGCTACGCTAAAGACGGACAGGTGATCGGTATTGGAGCTGGGCAGCAGTCTCGGATCCACTGCACTCGTCTGGCTGGAGATAAGGCTGATAACTGGTGGTTGAGGCATCATCCCACAGTTCTGGGTATGAAGTTTCGCTCCGGCGTCAAACGAGCAGAGATGGCCAACGCCATCGACCAGTACGTCAGCGGCACCATCGGAGAGGTACAGAGTAGATAACACACTTCATACCAC

Function

GO:

id name namespace
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0003937 IMP cyclohydrolase activity molecular_function
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity molecular_function

KEGG:

id description
K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143930 lncRNA upstream 16403 27571336 ~ 27571646 (+) True G106557
TU143928 lncRNA upstream 17858 27569987 ~ 27570191 (+) True G106555
XR_002650606.1 lncRNA upstream 798256 26788440 ~ 26789793 (+) True LOC111193569
TU143910 lncRNA upstream 818172 26769614 ~ 26769877 (+) True G106541
TU143847 lncRNA upstream 1135601 26452208 ~ 26452448 (+) True G106486
TU143945 lncRNA downstream 5150 27609381 ~ 27610614 (+) True G106564
TU143955 lncRNA downstream 26712 27630943 ~ 27634210 (+) True G106572
TU144055 lncRNA downstream 222356 27826587 ~ 27826848 (+) True G106636
TU144066 lncRNA downstream 301554 27905785 ~ 27906285 (+) True G106644
TU144068 lncRNA downstream 302725 27906956 ~ 27907211 (+) True G106646
XM_022674395.1 mRNA upstream 944839 26638967 ~ 26643210 (+) True LOC111193487
XM_022674396.1 mRNA upstream 944839 26638967 ~ 26643210 (+) False LOC111193487
XM_007232550.3 mRNA upstream 1072811 26511121 ~ 26515238 (+) True slitrk1
XM_022674934.1 mRNA upstream 1333172 26250173 ~ 26254877 (+) True LOC111193566
XM_022674365.1 mRNA upstream 1339702 26245239 ~ 26248347 (+) True LOC103039973
XM_022674942.1 mRNA downstream 125282 27729513 ~ 27739098 (+) True LOC103046391
XM_022674367.1 mRNA downstream 140857 27745088 ~ 27758097 (+) True LOC111193461
XM_022674943.1 mRNA downstream 154981 27759212 ~ 27768267 (+) True arglu1
XM_022674368.1 mRNA downstream 197853 27802084 ~ 27808084 (+) True LOC103047315
XM_007234822.2 mRNA downstream 286487 27890718 ~ 27905645 (+) True LOC103043862
TU143503 other upstream 2218610 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 2218610 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 3174951 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 3598457 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 3664278 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 410285 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 462121 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 1112371 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 2176095 29780326 ~ 29780927 (+) True G107117

Expression Profile