RNA id: XM_022674942.1


Basic Information

Item Value
RNA id XM_022674942.1
length 1315
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC103046391
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 27729513 ~ 27739098 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcATCTCTCTGTAGCGTCAGGGTTACAGCAGACCAACAGAGCACTGAGACACAGTGGAGATCTTCAGAACTCCTGAACTCCAGTACTTCTGAGCTTTTGTGCTTCTGAGAGGAGAAGATTAAAGACAGAATGATGTTTAGCTCAGTATTGGCTTTATTAATACTTCTGAACCTGCAACCTCAGATCAGGGCAGTGGAAGGCCTGGATCTACGAGCTTATGACTACACCAAGTACCACACCATGGACGagATCTCaggctggatgcagcagatGGAGAAAGATTATCCTGAGGTTGTATCTAGTGTGATATACGGAACCACGTACGAGAAGAGGAACATCACCCTGCTGAAGATCGGGTTAAACAGCACAGAGCTGAAGAAGGGGATCTGGATGGATTGTGGGATTCATGGTAATGAATGGATTTCTCCTGCTTTCTGTCAGTATTTCATAAAACAGATCCTGAGCTCTTACAAAACTGACCCAAAAATGGGTGAGATATTTAAGAACCTGGATTTCTACATCACTCCAGTTTTGAACAGGGACGGGTACACATACTCCTGGAAAGATAACATGACTCGTCAGTGGAGGAAGAACAGGTCCCCAGGTACCGGCAACTGCACATGCTACGGCACCGACATCAACCGCAACTTTAACGTCAACTGGGGAACCGTGGGAGTGTCTAAACTGTGCTGCATCGGGATGTATTGCGGTCCGTCCGTCCTCTCAGAGCTGGAGTCCAGAGCCGTCACTGAATTTCTGGAGTCTAATCGGAACAGAATTCTGTTATTTCTGACCGTCCACTCTTTCGGTCAGCTGATTCTACTTCCCTACGGACACTCCAGTGTTTCAGTCCCCAACTATGAAGAACTGATGGAGGTGGGTCAGGCTGCAGCAAAGGCCATCAAATCCGTTCACGGAATGGACTACACTGTGGGCGCAGCGTCGGATGTGATGTATCAGACGTCGGGTTCTTCGCGGGATTTTGCTCGTCTGATCGGGATCCCGTTCGTCTTCACCTTCGAGCTCAGAGACAAGGGCGAGTTCGGCTTCAAACTGCCTGAAGATCAGATCCAGCCCACCTGTGAGGAGGCTTACCAGGGGGCGCTGTCCATCATCACCACTGTCCACGACAAGACCTTCACCAGCGCCGCGTTCACCATAACAGCCACACTGTGGACCACGCTGACCGCCGCCTGCCTCTCTACCGCCACCTGGGTGTAATTGCATGGGAAATGACTGTTGCGCTGTAAATTTACAGTGTtcctttgctttcttttttttctgttaataaaatgaataattttgcTTGAATTT

Function

GO: NA

KEGG:

id description
K23009 CPO; carboxypeptidase O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143955 lncRNA upstream 95303 27630943 ~ 27634210 (+) True G106572
TU143943 lncRNA upstream 104812 27583377 ~ 27624701 (+) True G106562
TU143945 lncRNA upstream 118899 27609381 ~ 27610614 (+) True G106564
TU143930 lncRNA upstream 157867 27571336 ~ 27571646 (+) True G106557
TU143928 lncRNA upstream 159322 27569987 ~ 27570191 (+) True G106555
TU144055 lncRNA downstream 87489 27826587 ~ 27826848 (+) True G106636
TU144066 lncRNA downstream 166687 27905785 ~ 27906285 (+) True G106644
TU144068 lncRNA downstream 167858 27906956 ~ 27907211 (+) True G106646
TU144070 lncRNA downstream 173208 27912306 ~ 27914261 (+) True G106648
TU144061 lncRNA downstream 176449 27915547 ~ 27918196 (+) True G106642
XM_022674939.1 mRNA upstream 125282 27588049 ~ 27604231 (+) True atic
XM_022674395.1 mRNA upstream 1086303 26638967 ~ 26643210 (+) True LOC111193487
XM_022674396.1 mRNA upstream 1086303 26638967 ~ 26643210 (+) False LOC111193487
XM_007232550.3 mRNA upstream 1214275 26511121 ~ 26515238 (+) True slitrk1
XM_022674934.1 mRNA upstream 1474636 26250173 ~ 26254877 (+) True LOC111193566
XM_022674367.1 mRNA downstream 5990 27745088 ~ 27758097 (+) True LOC111193461
XM_022674943.1 mRNA downstream 20114 27759212 ~ 27768267 (+) True arglu1
XM_022674368.1 mRNA downstream 62986 27802084 ~ 27808084 (+) True LOC103047315
XM_007234822.2 mRNA downstream 151620 27890718 ~ 27905645 (+) True LOC103043862
XM_022674370.1 mRNA downstream 254901 27993999 ~ 27999852 (+) True LOC111193463
TU143503 other upstream 2360074 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 2360074 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 3316415 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 3739921 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 3805742 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 275418 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 327254 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 977504 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 2041228 29780326 ~ 29780927 (+) True G107117

Expression Profile