RNA id: XM_022674952.1


Basic Information

Item Value
RNA id XM_022674952.1
length 1200
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC111193571
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28785964 ~ 28791991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTCAGGCATTAAGCAAAACACCTCAGTGCATTAACTCACACCTTCCAGTTCAAAAACAGGAAACTGATACTATTTCCTCCATTTGTCAGAGAAGAGCTTTAGAAGAAAAATGAAGTCCAGAAGCAGTGCAtcactcttcctcctctgcGCTCTGATTATTAACAACTATACAGACTCCAGTGCATGTGACTTCACTGTGGCAGTAGGGAGCCCTGTTACCATTAAGCTTGGCCTTGATCAAACTGATGAGCTTCAATGGAAACACGACTCTAAGAGAGTGTTTAAAGGAGAGGTTAAAACATTaccaacaaaactaaacaacGTGAAGCTGACCAGTGATGGATCCCTTGTAAtcatttctgtaaaaaaagaagataatgGCGACCATGAGTTTGAAGTTTTCCTTTCGAATGGCAGatctaaagcaaaaaaaacaatcacactGTGTGTTCATgaaaagcCACCTAAGCCAACGGTGAACGCCACATGTATAGATGGGACTCCTTACATTAAATGTGAAGTTAAAGACCAAACCGGACGGACCTTCAGTTGGtataaaaatgggaaaaaaattgatGGAAATTCTGCAAGTCTAAGAAACATTGAGAGAGATAAGGAATATGAGTGTGCTGTGGAAAAACCCATTCCAAGTGAAAAGAGTAATAAATTCAGACCAGCCAAATGTACAAGTTCGGAGAACGGAGAAGAAGACGATATGCTTTGGGGTTTTGAGCGCTGGATAATGATATCTTTTATAGCAGGAGGAGGGAGTctggtgctggtgctgatgATCGTGCTGGTGATATGTGCCTGTCAAAGCTGCAAACGACGAAAGAAACGCCTACAAGATAAAGAGGAGTTACCCCGCTTTCCAGGATCTGCTAAACCTCCCCAGACTCATCAAACATCAGAGAACACTGCAGGAAATCAGCCAGCTTCCTCCCCAACAACACCCTGAAATCTCACACTATACATAAGATACATCCTGGATCTAAGAAGAGTCCTCTGCCTGCACCCGATAGataatgatgaagatgatgatgatgatgatgatgatgatgatgatgaacaaCCTACACCATTATTCCAACCCAGGAAAAATGCTCCACACAGCAAAAAGAAttaagcagaggtggaaagtaatgaattacatttactcaagttactgtaattgaaaagattttatgagtaatttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144297 lncRNA upstream 7484 28778182 ~ 28778480 (+) True G106800
TU144296 lncRNA upstream 8927 28776546 ~ 28777037 (+) True G106799
TU144292 lncRNA upstream 50993 28734295 ~ 28734971 (+) True G106795
TU144289 lncRNA upstream 58244 28727286 ~ 28727720 (+) True G106792
TU144288 lncRNA upstream 58870 28726720 ~ 28727094 (+) True G106791
TU144326 lncRNA downstream 17344 28809335 ~ 28814062 (+) False G106803
TU144330 lncRNA downstream 17344 28809335 ~ 28812932 (+) False G106803
TU144328 lncRNA downstream 20781 28812772 ~ 28865069 (+) True G106803
XR_002650609.1 lncRNA downstream 21414 28813405 ~ 28814051 (+) True LOC111193572
TU144337 lncRNA downstream 37308 28829299 ~ 28850608 (+) True G106807
XM_022674375.1 mRNA upstream 62138 28703067 ~ 28723826 (+) True LOC103027743
XM_022674374.1 mRNA upstream 83043 28702012 ~ 28702921 (+) True LOC111193466
XM_022674373.1 mRNA upstream 88868 28692844 ~ 28697096 (+) True LOC111193465
XM_022674372.1 mRNA upstream 93659 28689555 ~ 28692305 (+) True LOC111193464
XM_022674370.1 mRNA upstream 786112 27993999 ~ 27999852 (+) True LOC111193463
XM_022674377.1 mRNA downstream 19833 28811824 ~ 28815508 (+) True LOC111193468
XM_022674951.1 mRNA downstream 49188 28841179 ~ 28865225 (+) False LOC111193570
XM_022674950.1 mRNA downstream 49189 28841180 ~ 28865221 (+) True LOC111193570
XM_022674378.1 mRNA downstream 333882 29125873 ~ 29127641 (+) True LOC111193469
XM_022674953.1 mRNA downstream 357074 29149065 ~ 29159524 (+) False LOC111193573
TU144257 other upstream 65684 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 718981 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 763917 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3416525 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 3416525 25361744 ~ 25369439 (+) False LOC111193563
TU144751 other downstream 988335 29780326 ~ 29780927 (+) True G107117

Expression Profile