RNA id: XM_022674956.1


Basic Information

Item Value
RNA id XM_022674956.1
length 6236
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC103024513
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29208551 ~ 29241597 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCTCTTTAAACCGATCAGCCTGGGTCAGCCTAGCTCCCAGTGGAGCGGATTTAAGAGAGCCAGCAAGTCATGTGGGGATCAGGATCCGAAACTCACCATAATCCTCCAGAGAAGAAAGGGggtaggtagagagagagaaagagagagagacagagagagagacttagtTAGTGCAGCAAAACTCAGGCTCGTACACTCAGAGACTCAGCGTACTCTCAACATACTGTAGGCTCCCTACATTCGCATTATGGCCCAGGCCAAAAGTGACGCGGGTCTCGACTCTGAGATTTCTAGTGATACAGTCGTCCAGTCTACTGTGGGACCAAGTACAGACCTGGACAGTCGAAGCaatgaggaggaagaggaggaggaaatcGAGCTTGCGGAGGAAGTGGATGAGTATATTGGCTTTGGAAGTGAGAACGGCACAACAGGGAAGCAGATAGACGACAGTGGAAAGTCTCCACTTGGCCAGGAAGAGGAATCTAAGCTGGCTGTGGTCATAGTGCATGAAAACCCAGAAGCTGAAGAACAAGGCAACATGGATGAGGAAAGTACTAATGATGGAGAATCTACGGAACAAATGGATGCCCCAAAGGAAGAGCTTGAAAATGTAGCAGAAAAGACAATGACGAAGACAGATGATGAGCCAAAACAAGCACAAGCtaacttaaatttaaatgagCCACAGAATGAAACTGAACCAGCACCTGCACTATTACCATCCCAAAATCCCATCCCAAAAGCACAGCCCATTGCTGAAGAACCTTCTGCAACAAACATGGAGGACAAGGAGTTGGAGCTTGAGCTTGACAAGCCACAAACTCAACTGGAGGAAGTTCCAACAAAATCTCAGGAAATccaagaggaagagaggaagtcTGACATTTTCAATGCAAACTCAGAAGACAAAGGTATAATAAAGATAGAAAAGGTGGAGGAAAAGTCAGATATTCAGGAACAGGCTGGAGAAGAACGTGGCACAAAGACAGAAATGGAACAAGTGGTGGCACAGGCATCTTCTGAGGTAGGAATGATGGAGAGTCAGAGCCTGGAGATAGAAAACCAAGCTAATTTTCTCTGTTCTAATGATAAGACATTGCAGGAAACTGTGCATTTGACTGATGCCATTTCCTTTGAAGTACCCCAGAATAAAGTTGAGCAACCTACAGAACTGGAGAAGCAATGCATTGTCAGTACAAATGCTACAGTTCAGGAGGTTAAAGAAGTGGTGGTAGATGCTGTGTTAGGTGATCAACCAGCTAATGAGTTCCAACAGTCTGAAAAGTCTAAACAAGTTGCAAGCCATCCTGTTTTGAGGAGTGAGATAGGTATTGCTGAACAGGAACAAGCACTAGAGAAGAAACAACCAGATTTGTTCAACAGGTTAATCACAAAGGAGCCATTGCTAGAACACGTAGAAGATAAAACAGCAGCGGTGGCAGTGGTAGAAACCAATGCTGAGGTCCCAACAAATGACTCAAAGGAGCCTAATGTGGAAGGACTTGCTATTATTAGTCAGCCTGATGAAGAAATCCAAGCTGAGGAGAATAAAACAGAGGTGAACGAAGTTAAAACAGAATTAGTTATACCAAATGTGTCTTCAGTAGAAGCAGAAAAAGACTGCCAAAGCATTCCCAAATCACCAGAGTCCTTTCAAAATGATGATGCCTTTAAAAGTGACAGTGGACACGCCAATAAGACCAAGCAACAGACCACTGTAGAAGATGAGCCAATGAACAAAGAGCTCGACGAGGTGAGATTGGAGAAGGAAGCCACCATTTCTTCAACGGTTCAACAGCAAACAGAAGAGGCTACAAGCAATGAAGGCAACAAGCTTTCAAAGATGGCCGACGAGACTGGTCTGGAATTAGCGGAAGAGTGTGAAGAACTAAAGATGCAAGATGAACAGCCGATTGAATCAGTAGAAAAAGATATACcagaagaaaaagagggagataataaagaaatacctgttgaaaaggaaaaaaagaaacatgaagAAAATCTCATTCAAATCACGGAGGATCCGACCGCTGACCTGAGAGAGAATACATGTCCAGTAAAGCAGGTCAGCAAGGAGGAGGGAGGAGTGTGTAATGCGATAGAGAAGCCAGCAGCAAAGGGAGTGTGTAAGAAGATAGAACAGCCAGGTGAGGTCAGCAAGGATGAACCTGACCCCGTGCAGGAGAGAAGGAGCAACAGGCTAGTGCTGGAACAGCTGATCAGAGTGATTGAAAGCAAGCAGAAGGCAGCAGAAGCAGAGATCACCAAAAAGGAACAGCCAAGTTCGAGTCCAGTCACTGAAGTGGTGCCAAAAGCAGCACAGGAAGAAGAGAGTAAGGTAGTAGAACAGTCCAAGGCCGTCACTGAGGACGAGCCAAAAGATGAGCcaaagaagagagtgagagagggagggcgTAAAGTGGCGATACCCGCCTGGTTAATTGCCAGCGAGACATCAGAAGTACAGGAGCCTCCGAAACCCCCTGTTAATCGATTGAGGAAGTTTAGCATTGAGCGTGAAGCAGAGACAGGTTTTAAAGCCAGAAGTCCAGAGGTCATGGTGGAAAATGGACTTCTCGGGTCTCCAGTGAGAAAGCAATCAGCGCAGCTGAAGAAGTCGTCCCCAGACGTGATGCCAGAGGAAGCTGTGGAGCCTCCAAAGACGACTCCAGtggagaaaaagaaggagaagatTTACAGTTCTGATCCTGCGGACTGGGAGATCTCCCTCTATGTGAAGGCAGGAAGTGATGGTGAAAGTATTGGAAACTGTCCTTTTTCTCAGAGGCTCTTTATGATCCTCTGGCTAAAGGGGGTCATCTTCAATGTGACGACTGTGGATCTCAAGAGAAAGCCAGCGGACCTGCAGGACCTTGCTCCAGGTACCAACCCGCCTTTTATGACCTTCAATGGTGAAGTGCTGGTGGACGTCAACAAGATCGAGGAATTTCTTGAGGAAAGGCTCGTGCCACCACGGTACCCGAAGTTATCTGTGAAGCACCCAGAGTCAAACACTGCAGGAATAGACGTGTTCGCCAAGTTTTCTGCCTACATCAAGAATCCTCGCAAAGAAGCAAATGAtgGTTTGGAGAAGGTTCTTCTGAAATCTTTAAAGAGATTGGATGAGTATCTGCAGTCTCCTCTGCCGGAGGAGATTGATGAAAACAGCACTGATGACCCTGGACCGTCCACACGAAGCTTCCTTGATGGACAGGATCTGACTCTGGCTGACTGCAACCTGCTTCCAAAACTCCACATCATTAAGatTGTTGCAAAGAAGTACAGAGGTTTTGAGATTCCAGCCGACATGACAGGAGTTTGGCGGTACCTTAACTCCGCCTaccagagggaggagttcatcAACACCTGCCCTGCAGAACGAGAGATCGAGTTCGCCTACCTGGATGTTGCCAAAAAGATCAGATGAATGTGGCAAAACATGCCAAAAAGTGTTCTTCGGAGTGATGATGCCACAAAAGACCATATTCTGCTTCCCTAAAGAACAGGTTAATAGATGGTTCTTTAAAGaaccactttttttaaaatgagagGAGTGTGAAGAGTTTGGTCCCAAGCCAAgcgttattttttattaacctTTACTTTAAAGAGTGTGTGCAGGTTAGACTACTTTGTGAgtacatacactatattgccaagagtttgtagaagcagtcttcatcactagctgctgcttttatacacCTGGCATAGAAGTGTTTGGAACCTTAATGTTAAAACCTTAAGCTTAATGATTTGAATGGGTGAGCAAATATGTtcggcaatatagtgtataaatgTCTGTGAgtgtgcaaatgtgtgtgtgtgtgtgtgtgtgagagagagagagagagatagacagagagagagagagagagagaaagtgtgaacgAGTGCACTGACTGGGGTATAATGGGGTAATACATTTCTAATGGCTAGGTTTAGGTATTTTATATAGACTGAGGTTATTTGTTTCTTGATGGTATCCCCTCTAAACaatcaaacacaaaaaataaagatttgcaAATATACTGTGACCTCCATAATGTTTGAGATGAAGGCATTAACCCTTCAAGGCTCCTTTCCTCATTTCTAAATTTGCAGCTGTGTTTAAAGAGGACATCTCTAAAAATCCCAAATGTTTTCTAGGAACAATTTTAGGATGCTTTCTcacctgccttgtttggtccggactttccaAGTTTTCAGTTTGGGTccaaaccaaagtagcaggtgtgaaagaaGCCGCAAACCACGGTCCAGATCAAAGGACCAGAGATTTTTCCATCCAAAAGAGGTGTTCTCAGtccggatctactgaaccatggtctggttcatctgcagtgtgaaaacactttactagatggttcagactttcaggCCACTTACAGAAAGTCTCTAAATAAACCAGAGGAGatctaaaaacagaaataaaaggaatctgaggagaatattttacacttattcTGCTGCGGGGAGAAGGAAAAgtcagattctgacagagaTCTGAAATTCAGCACAACATCTGAAAGCAAAGCAACTCGCTGATCTCAAACTATCATTCTAACAAAACTatcattctacaaaccaattaacatgaagtatagagagactccgCCCTCATAGCTGTCACTAAACTGAAGTGTAAACAATCTAACAAAGACATTATTAAGCTTTAGTGTGAATTCTGATTTAGACtatcaggtgtgaaaatgctctaaaatgtagCACACAGGATGTAATGTAAGGACTGTAGTTTTATGGAGTCTGGCCCTGCTAATGCTTGATGATTGATTTTCTTTGATGATAAGTTTGACACCCTGCAAGAAAATGTTTCAGCTTTATaccattattatataaaatcatGGGCAGCCCATGCTTTTTgagtgagcattatcctgctgaatgATACCTGTTGGATGGCTCTGCCATAAGAGGAAACATGTGTGACTGCAAGATGTCATTTTATGAGCTTATTTGATAATATTTTGACCACATAAAACAACGTGTACGACACCCTAGCAAGAAAAActtccatttttttctgttaaataaaaatcacaagtCATATAGTAAACACCACTAAGTGCACAGTGTTCACTCAGACAAAACAGTTCAGAAATGTCCTCGCAGCTTAAAAATCATATAGCAAATCGGCCTTAGTTTAAATGGGACATAATATACCTGTTTTTATACAAGTTAGAATAGATCAATGGGCTACACAAAACATGTTTGTGAAGTTCTTTGCAAAAAAcaactctcacataaagagatcacaccagctctattcttgtaagtttcagtccctttcagaatgagctgtttaagggctctgacacttttatgccaataagctgttgctggccatacCCCATGTTTACACGGAATTCactatttgaaagtacttacatctcccttattTGCTGACTttccacagacagtaggtacagatccctccctcagacaaagtcttctggctaatcctgctgttttcTATCTGAgattctcaaccagcagacatGAGTCTGGTTGTTGGTTAATGGGTGaagggtggtgccagggtggttctatgcagttTTCTTATTGTGATTTCCAAAAAGCTCATAAAAACATATGGTTTCTCACATCAAACTCTTTTAGCTGATTCACACAAAACATATGGATGGATTTGTtggtgtttggagtgtttatgGATGAAGccgagacccaagtggaaacacaaaaacacataatcCTCTTTACATgcctgaaagtaaaaaaaaacagtaattaatacAGTGTGTGCCCTTGTTCCAAACATTATGGAGAGGACTGTATTTGCAGTTTTTGCGAAGTTTCATTCATCTGATTCTTTTTTCTCTAACGCACTGACTAATGTGTGACTCTAAATTTGATTtctgtataaaagtataaatctCATCAATCAGTAACTTTAGCAATGTGATGTTTGTCTCTGTTTTGTTAGGGTTGTTGTGTTAAGTGCTTTAGCGTTTTCCAGTATATTGGAGAATATTATTAGAACGTATGACACACTGTAGTCATGTCCGTTTTCTACTTATATTTGATACGTGAAAAATGTCTTTTACATAAATGCAATTAACTCTTTTTTCATCTTCTTTATTAGTCTTTTATATAAAGGTGAAAGCTCTCCTGTTTATTAGTTGTTTCTAAGAACTGATTCTTCCTTCTTGTGTTTTGTCACATAAatttcagagaaaaacaaaacaa

Function

GO: NA

KEGG:

id description
K05026 CLIC6; chloride intracellular channel protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144492 lncRNA upstream 48872 29149090 ~ 29159680 (+) True LOC111193573
TU144407 lncRNA upstream 72103 29135975 ~ 29136449 (+) True G106859
TU144405 lncRNA upstream 89806 29118496 ~ 29118746 (+) True G106857
TU144403 lncRNA upstream 95215 29112320 ~ 29113337 (+) True G106856
TU144537 lncRNA downstream 80948 29322545 ~ 29323347 (+) True G106954
TU144582 lncRNA downstream 125089 29366686 ~ 29367170 (+) True G106992
TU144583 lncRNA downstream 125769 29367366 ~ 29367681 (+) True G106993
TU144602 lncRNA downstream 162289 29403886 ~ 29404268 (+) True G107012
TU144604 lncRNA downstream 164391 29405988 ~ 29406309 (+) True G107014
XM_022674953.1 mRNA upstream 49028 29149065 ~ 29159524 (+) False LOC111193573
XM_022674378.1 mRNA upstream 80911 29125873 ~ 29127641 (+) True LOC111193469
XM_022674951.1 mRNA upstream 343327 28841179 ~ 28865225 (+) False LOC111193570
XM_022674950.1 mRNA upstream 343331 28841180 ~ 28865221 (+) True LOC111193570
XM_022674377.1 mRNA upstream 393044 28811824 ~ 28815508 (+) True LOC111193468
XM_022674965.1 mRNA downstream 175625 29417222 ~ 29519834 (+) False LOC103025657
XM_022674962.1 mRNA downstream 175926 29417523 ~ 29519834 (+) False LOC103025657
XM_022674964.1 mRNA downstream 175926 29417523 ~ 29519834 (+) False LOC103025657
XM_007238273.3 mRNA downstream 242945 29484542 ~ 29519834 (+) True LOC103025657
XM_022674966.1 mRNA downstream 296740 29538337 ~ 29558043 (+) True donson
TU144257 other upstream 488272 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 1141569 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1186505 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3839113 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 538729 29780326 ~ 29780927 (+) True G107117

Expression Profile