RNA id: XM_022674966.1


Basic Information

Item Value
RNA id XM_022674966.1
length 2550
RNA type mRNA
GC content 0.52
exon number 10
gene id donson
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29538337 ~ 29558043 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCGCAGACTAGCGGGAAATACACTCACAAATCTGAGGGATTGATATGCGTTTCTGGGACGCATTGTTGGTGGTCgtctgttttgtatttgcatCTCGCGCGAATTTTGGATTCGGGGTTAAACAGGACCGGCGGAGCGGGAGAGCTGCGGATCAGTCAGTGTGAttaatatagttataaatacAGATTATTGAGGTCAGATATTGTGTTCACGAGGTTTTACAGCAATGGCGGATCAGAGCTATTACTCCCCGAGCTTTAAGAAGCCCTCCGAGGTTCTGCGGATGCGGAGGAAGAGGGCGCGGAGTGAGGGAGTCTCTGCGGGCTCTGGAGGCGCCGCTCCGGGCTCCGCGGGGTTAGCCGGGGTTCGGCCCTTCTCTCCGGGGCCGCTGCTGCTGAAAGGCCCGGTCCGGACCGGCAGTGGCGGCGCGGTTAAGCGCAGGAACCCATTCGCTAACATTGAGAACACATATAACAGCCCGGGGAAGCGGAGGGCCGTGTCCTGCGCCGCGGAGGAGCCGGGCTGCGGGGGGGCTGCAGGCGGGCGCTGTGAGGCGGAGAGTCCGGGAGAGCAGACCGCCGGCTTCGGCTCCTCTCTCACCGACCTGCTCTATAATAATaacactactgctgctgctaaacacaccaaaacacacgaGAACGTATCATTTTCTGAAGAAGACTCATTATTCGAAGAGGATTTATTTGGGCCTGAAAAAGCAACCCCCATTTTAAAGAATCCAGAAGCTCCTGAGGTTGGCGATTCTCCTGCTCCAGAGGTTTGCAGAGAATATCCAGCAGACTGGAGTCTGAAAACCAGGCTGCTCTTCACTTCCCCTCACTCCTTCTCCTGGGCTGAACACTTAAAGGCACAAGAAGAAGCACAAGGCCTGAGTTTGCACTGCAGGGCAGAGTACGCCAGTCTGCCACTCAACATCCAGGACCCCCGTAGCTGCACAGAGCTGCGCTGTGGTTTCCAGCAGTGTCTGCAGTACTGGCAGCACCCCTCTCTGCCCTGGCTCTCACTCTTCCCCAGGATTGGAGCCGAGCGCAAGTTCGCCGGCAAGAACACGCCATGGGCACAGGACGCTGCGGTTCAGCAGAGCCTGATGAGCGAGTGGTCAGGCAGTCTCACCTCTCTGTACAGTCTGCTGAAGGCCAGACTCTGCCCGTACTTCTACGTCTGTTCCTATCAGTTCACTGTGCTGTTCAGAGGAGCAGGACTGAGTGGGGCTAAGGGCATCACTGCTCTTCTTACCCCCACCACCAGGGGGCTCCGCGAGGCCATGAAGGCTGATGGGATAGAGTTCTCACTCCCTCTActggaggagaagaggaagagcaaagagagcagctctcagcagactGATGGAGATGAACCAAGCAGTGCTGTGACGTCACAGTGTACTGATGATAAGAAAGAAGATGAATATGATGAGGATGACGACGACGATGATGATGGTGGTTTGTCTTGGCTGCAGGACATGGGAATACAGGACAAGATCAAGAAGCCTGATAGCATCTCAatcaaaatgcgTAAGGAGCACAACGAGGTGCGGCTGGACCACAGGCCGGAGTCCGTAGTGCTGGTAGAGGGCTCCAACACTTTCACCCTGATCAACTTCCTCATTAACTGTAAGAGTCTGGTGGCTGGAGCTGGTTCTCAGGCTGGGCTGCCCCCAACCCTGCTGGCCCCGACCGCATTCAGAGGAGCTACACTGCAGATGCTGAAGGCCCGGAGTGTGAATGTGAAGACCCAGGTGAGAACAGGTTATCAGGACGTGTGCAGTCTGGAGGTGACCGGCCCCATCATGCCCCACACTGTACATGCACTGACTCAGCTGCTGAAACCAGCCCAGAAAGGAGCTTTCTCTGTGTCGCTGTACACACACGAGCCCAGCGCTGTCCTAAACGTACCTGTAACCAAGCCATCTGAATCAGAACAACAGAGCGACGCAGCGCAGTGTTTAGAGAGGTGTGGTCTGCAGCAGAGCACGGTGCAGCAGCTGGTGGAGCCGACCGTGCTCGGCAAGTCTGCCCTCAGGCAGCTCCACATGAGAGACTTCTCTTACAGCTGGAACTCCTGAGGAACACCTGCCTCCTTCCAGTTCACCCACGATCCTATTTATCTGAcaatactgctctgtaatttaTGAAATACGTTGAAAAACCTTTGCCTCAGTTTCTCATGCGAAAGACTTCTATGCCATATCTGCACCCCTCATTTAAGAGAGGCTGAGATTTGATCAGGACCTGATTTAGCTGTGACGTTTTGTAGAGATCCCAAGGTACGATCCCTCTAAAAGTGCCTATTGATtgtcttgatattttttttcattttattcttgATTTAGTTTTCTACGTAGTTCAGTAACTGTTTATAGATAAGATGTCTAGTTTTGTGAAAATTGAAATGCAGTGGTTTACGTATCAGCATAACATAAATATGTGACAGGAAAGAAAATGTAGCtttgtattgtgtgttttgggtttgatattttattgtatgtatgacattttatgtaattaaatgAATACCTTGTGCCCTTG

Function

GO: NA

KEGG:

id description
K22422 DONSON; protein downstream neighbor of Son

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144604 lncRNA upstream 132028 29405988 ~ 29406309 (+) True G107014
TU144602 lncRNA upstream 134069 29403886 ~ 29404268 (+) True G107012
TU144583 lncRNA upstream 170656 29367366 ~ 29367681 (+) True G106993
TU144582 lncRNA upstream 171167 29366686 ~ 29367170 (+) True G106992
TU144537 lncRNA upstream 214990 29322545 ~ 29323347 (+) True G106954
TU144660 lncRNA downstream 36995 29595038 ~ 29597014 (+) True G107056
TU144662 lncRNA downstream 39215 29597258 ~ 29600584 (+) True G107057
TU144670 lncRNA downstream 57235 29615278 ~ 29621512 (+) True G107064
TU144685 lncRNA downstream 97868 29655911 ~ 29656234 (+) True G107074
TU144686 lncRNA downstream 116053 29674096 ~ 29674334 (+) True G107075
XM_022674965.1 mRNA upstream 18503 29417222 ~ 29519834 (+) False LOC103025657
XM_022674962.1 mRNA upstream 18503 29417523 ~ 29519834 (+) False LOC103025657
XM_022674964.1 mRNA upstream 18503 29417523 ~ 29519834 (+) False LOC103025657
XM_007238273.3 mRNA upstream 18503 29484542 ~ 29519834 (+) True LOC103025657
XM_022674956.1 mRNA upstream 296740 29208552 ~ 29241597 (+) True LOC103024513
XM_022674967.1 mRNA downstream 5153 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA downstream 5153 29563196 ~ 29588122 (+) False LOC103025432
XM_022674379.1 mRNA downstream 98494 29656537 ~ 29658422 (+) True LOC111193470
XM_022674973.1 mRNA downstream 286057 29844100 ~ 30451601 (+) True ncam2
XM_022674975.1 mRNA downstream 286057 29844100 ~ 30451601 (+) False ncam2
TU144257 other upstream 818057 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 1471354 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1516290 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 4168898 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 222283 29780326 ~ 29780927 (+) True G107117

Expression Profile