RNA id: XM_022674976.1


Basic Information

Item Value
RNA id XM_022674976.1
length 1637
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC111193577
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30661999 ~ 30668744 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGTCCATTAGGAGGCAGCACTGATCCATTTCTCCAGTCCAGCAACAGGAGGAAAATCCACCAACCACAAcactacagcagcagcaacagatcAACGGAGTCTCTACAAACTCTTATTTGATGTAAGGTCTGGACGGGTCAGTATCAGTCAGGGTTTTAGGATGGAGGTGGCTCCACCCGGTCGTGATCCCGAAGCCTCTGTAAGCAGAAGCGGTAAAGCCGATGCTGAGGAGgaaggggaggaggaggaggtggtgcaCACGGCCATGCTGTGGTCCATTCAGGAGGCAGTGGAGAGGCAGACCCTTCAGATCGGGGTCTCGGCCTGCGGAGCTACAGCTGTGGTGGACGTGCTTCAGGCTCTGGGGATTACTGTAGCTCCAGAGACGGCCGACCACTGCGTTCGGACCAGACTGAGGAGAAACGATTCCCCACTGCCTGATTACCTTCACTCACGCAGCAACGCTGGTGCCACCCACCACCAGCTGATAGAAGGGGCAGAGCAGGCGAGTGGAGGTCGAGTGCTTGGGAGGTTCTTTGGTTTTTACCCAGCGAGGCGGGTAAAGCTGGTACCCTGGCTGGCGCGCTGGATCAGGAGAGGAGCTGTGCCTGTAGCCACCATGAACATGCAGCGGGGAGTAGCAGAGGGGGAGGAAATCCCTGATGCCTGGCATCACCAGCTGATCTTCGGGGTGGCACCCAATGCTGTGTTCATGACTAATCCTCTGGATGTGGCTGGTGAAGAAGACGTTCATGTACGTCTGTGCAGTGAATCTGTGCTGCTGATCCGCCGTGAAGACGTCTTAAAGAGGCTAACGCTGGACTGCCCACTCtcactgatctcagatcagcagGCTGACCCCCGCTGGAAAACCATCAATGTTGAAGgTCAAGTTAAGCAGATGATAAATGAAGAAGACCACAGTGATCAGGACCATCCAAAAACGACGCACATAACCATCCCCGCAgcgtacagctctggaatcaCGCTCTTCACTCTCAGAGACTCTGCAGTTGGTCAGGAGCTGCTCGGTGCTCCAGAGCTGCCTGTGTTATAGTCAGCAGTTCACTATGATCTGCATCGTGTCTGGACTTGTCCTTCATGCAGCTCGTTGCTGTGCTTCTTATAGATGATGTGCAATTGAAGTTTTGTGTCAGTATTTTAATCTGTACGAAAACGATTAGCGAGATTTTTAACACTGTATTCTCTGGCAGACTGGTAAAAGGTGGAAGTTTTGGCGTGTTGCACTTGTGTAAACTTGTCCACTCTGCTGTTGTGAAGAACATCATACTTTtagatgtgtaaaactgatttatttatataaattaaaagccTGGAAATCAGTGTACTGAAGGGATATGGCAACACAGTGCACTGGTTTTCAGTTCTGCCTGTGTGAATgcatcttaaatatttttatcttattattaggggtgtaaCTTTACAGAAAATTCACGGTTTGGTTCACACCTCGGTATAAACCCCACGGTGCAGTATGTTTTCAATACGTTTTCGGTacggttggtggaaaaaaataatttcataacaatgaatcttcattataaccatgtttagTTTTTGGGGATGGAATATTGTAACAGGGctcgagctcttttattaaatgcttaaaaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144926 lncRNA upstream 133515 30493411 ~ 30528484 (+) True G107267
TU144928 lncRNA upstream 168293 30493001 ~ 30493706 (+) False G107267
TU144919 lncRNA upstream 197068 30401626 ~ 30464931 (+) True G107261
TU144768 lncRNA upstream 206229 30448327 ~ 30455770 (+) True G107128
TU144907 lncRNA upstream 463055 30198295 ~ 30198944 (+) True G107250
TU145013 lncRNA downstream 46436 30715180 ~ 30716606 (+) True G107342
TU145072 lncRNA downstream 63924 30732668 ~ 30732900 (+) True G107389
TU145077 lncRNA downstream 74933 30743677 ~ 30744047 (+) True G107394
TU145079 lncRNA downstream 76687 30745431 ~ 30745631 (+) True G107396
TU145080 lncRNA downstream 91926 30760670 ~ 30790277 (+) True G107397
XM_022674380.1 mRNA upstream 114638 30540261 ~ 30547361 (+) True LOC111193471
XM_022674973.1 mRNA upstream 210398 29844100 ~ 30451601 (+) True ncam2
XM_022674975.1 mRNA upstream 210398 29844100 ~ 30451601 (+) False ncam2
XM_022674379.1 mRNA upstream 1003577 29656537 ~ 29658422 (+) True LOC111193470
XM_022674967.1 mRNA upstream 1073877 29563196 ~ 29588122 (+) True LOC103025432
XM_022674977.1 mRNA downstream 3408 30672152 ~ 30711252 (+) True gart
XM_007237759.3 mRNA downstream 592536 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 643996 31312740 ~ 31319149 (+) True adamts1
XM_007237757.3 mRNA downstream 656950 31325694 ~ 31341351 (+) True cyyr1
XM_022674980.1 mRNA downstream 678557 31347301 ~ 31402273 (+) False app
TU144751 other upstream 881072 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 1941719 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 2595016 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 2639952 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5292560 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile