RNA id: XM_022674977.1


Basic Information

Item Value
RNA id XM_022674977.1
length 3994
RNA type mRNA
GC content 0.53
exon number 22
gene id gart
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30672152 ~ 30711252 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTTCAGGAGTTCCACACGAGCAGACTCCCAGTTCACACCAGTACAGACCCGAGTCCTTCCACTGGAACCTGGACcgcagctggagcagcagcacCGCACACCCCGAGCCTTCCCTTCCCTCTGTACTGACTCCAGAACAGacagGTGCCATGGCGGAGCATGTGCTCGTGATTGGCAGTGGTGGGCGGGAGCATGCGTTGGCGTGGAAGCTGGCGCAGTCTCCTCACGTCCAGAAGGTCCTTGTGGCCCCGGGTAACGCGGGCACGGCCGACTGCGGAAAGATCTGCAACTCTGctgtcAGTGTGAGTAATCACTCTATCCTGGCTCAGTTCTGTAAAGATCATAATGTGGGACTGGTGGTTGTTGGCCCGGAGGTTCCTTTAGCTGCAGGTATTGTGGATGACCTGACGGCAGCAGGTGTGCCGTGCTTCGGGCCCTCAGCCAAGGCGGCCCAGCTGGAGGCCAGTAAAAGCTTCTCCAAGAGCTTCATGGACCGTCACGGCATCCCCACGGCccgctggagctccttcacagacCCTCAGGAGGCCTGCAGATACATTCGAGGGGCGGATTTCCCAGCTCTGGTGGTGAAGGCCAGCGGCCTGGCTGCAGGGAAAGGAGTGATTGTAGCGAAGGATAAGGATGAGGCCTGCCAGGCAGTACTGGACATCATGAAGGACAAGACGTTTGGCACAGCTGGTGATACTGTGGTGGTGGAAGAACTGCTTGAAGGAGAGGAAGTCTCTTGTCTGTGTTTCAGTGATGGGTCTACAGTAGCTGCTATGCCTCCTGCTCAGGACCATAAGAGGCTGCTGGATGGAGATCAGGGTCCGAATACGGGGGGAATGGGAGCGTACTGCCCCACCCCACAGgtatctGAGGAGATGCTTCAGCAGATCAGGACCACAGTTCTTCAGAAGACAGTAGACGGTATGAAAGAAGATGGAATTCCATATGTGGGTGTTCTGTACGCCGGGCTGATGTTAACTGATCAGGGGCCGAAGGTGCTGGAGTTTAACTGCCGATTCGGTGATCCGGAGTGTCAGgtgctgctgccgctgctgaaGAGTGATCTGTACGAGGTGCTGAAGAACACGCTGGAGTCTAAACTGGCCTCAGATCCTCCGCTGTGGTTGGACGACAGCGCTGCGGTCACTGTGGTGATGGCCAGTGAGGGATATCCTGGAGTCTATAAGAAGGGTGTGGAGATCACAGGTCTGTCTCAGCTCACAGAGATGGGACTCCAGGTGTTCCACGCCGGCACTGCCCTGAAAGAAGGAGGCGGAGTTGTGACCAGTGGTGGGCGTGTCCTAACTGTGACCGCAGTCCGGCCCACTTTAGAGAGCGCTTTACACAGCGCCAATCAGGGCGTGGCAGCGGTGGGCTTCCCCAACGCCGTGTACCGCCGAGACATCGGCCACCGAGCCATCGCCTACCTCACCCGCAccagAGGGCTGACGTATAAGGACAGTGGAGTGGATATAGCTGCAGGGAACAAGCTGGTGGATATAATCAAACCTCTGGCTAAAGCCACGTCTCGCTCAGGCTGCAGTGCTGATCTCGGAGGCTTCGCTGGGCTGTTTGACCTGAAAGCTGCTGGATTTGTTGATCCGATTCTCGTTTCTGGAACTGATGGAGTTGGTACTAAACTGAAGATTGCACAAGATTGCAACGTCCACAACACTCTCGGACAGGACCTGGTGGCCATGTGTGTGAATGATGTTCTggcccagggggcggagcctcTCTTCTTTCTGGACTATTTCTCCTGTGGGCACTTGGATGTGGGCGTGGCCTCATCTGTGATTGGTGGTATTGTGGAGGGGTGTCAGATGGCAGGATGTGCTTTGTTAGgtggagaaaCTGCAGAGATGCCGGGAGTGTATGGTGCTGGAGAGTATGACCTGGCCGGGTTCTGTGTCGGAGCTGTAGAGCGGGGGTCTCTGCTGCCCAGGCTGGGGGATATTCAAGAGGGAGACCTGCTGATTGGTGTAGCCTCCTCCGGGGTGCACAGTAACGGATTCAGCCTGGTGAGAAAAATCCTGGAGCGGGCGGGGCTCCAGTACAGCTCACCCGCCCCCTTCGGATCACCAGGACAAACCATGGGTGAGACGCTGCTCACACCAACCAAAATCTACAGCCGCCTTCTCCAGCCCATCCTGCGCAGTGGAACCGTTAAAGCCTATGCCCACATTACAGGGGGCGGCCTCCTGGAGAACATTCCCAGAGTTCTACCCAAAGAACTGGCTGTAGACCTGGATGCGACTCGCTGGAGAATTCCCTCGGTTTTCTCGTGGCTGCAGAAGGAAGGAGGACTCTCTGAGGAAGAGATGGCCCGGACGTTTAACTGTGGGCTGGGAGCGGTGCTGGTGGTGGGAAAGCAGGACGCTCAGAGGGTCCTCAGACAGCTGCAGGCCCAGGAGGAGGCGTGGATCGTTGGCTCGCTGATGCACAAACTGCCTGGTGGAGAAGCTGTGGTGGTCAGAAACCTGTTAGACAGTCTGAAGGCTGGTCCTAATCCCTCTCCTGATACCAGTGTTCTTCAGAACGGAGCTTCCCACGCAGATTCCAGCTCCCGCAAGAGGACCAAGGTGGCTGTGCTGATCTCTGGGACGGgcaCCAACCTGCAGGCCCTGATCGAGCAGACCAAGAAGCCGTCCAGCTCCGCTGAGATTGTGGTGGTGATCTCAAACCGGCCGGGGGTTCTGGGTCTGAAGAGAGCCTCCATGGCTGGAATTCAGACACGGGTGGTGGATCATAAGCTGTATGGGAGTCGTGCTGAGTTTGACAGCACTATAGACCGAGTGCTGGAGGAGTTCGGGGTGGAGGTGGTGTGTCTCGCCGGCTTCATGAGAATCCTCACCGGAAACTTCGTCAGAAAATGGAACGGGAAGCTGCTGAACATCCACCCGTCTCTGCTGCCGTCTTTTAAAGGAGTGAACGCACAGAAGCAGGCACTGCAGGCAGGAGCTCGAGTCTCCGGCTGCACCGTGCACTTCGTCGCTGAGGAGGTGGATGCTGGAGCTATCATAGCTCAGGAGGCAGTCCCTGTGCTGACCAATGACACGGAGGAAAGCCTATCGGAGCGCATCCGGGAGGCGGAGCATCGGGCGTTTCCCAGTGCGTTAGAACTGGTATCCAGTGGAGCGGTCAGACTGGGGGAGGACGGACGCCTCCTGTGGAGCCAGTCTGCGTAGAGTTCGGGCTGCGGCTAGCGTGATGAAACCTGGTTTAGATTAGAtccagtataaataaataaaattcctCTGCCTGAATTCTGAACTGAGCTTGTTTACATCACTTACTGAGAGCACAAGTGACCTTTCATTTCATTCCATTTCttttcatctcatctcatttcaTTTAATTCTATTATTTAGCTGTTAGAATGATGTAGAATGCTTATTTGTCTAGTTTAAGAGGAAGTGTAAATGTTACAAGTATTACTGTGGTTTTGTGTTATTTCTGAACATTCCATTTTTCTAATATAAACATACAACACCAGACTCCCATCTCTATGAATGatcaaaaacaccaaaatacTTAGAAACTGAAGGtcaaattgtcattttaaaaacattttttaaataattgataagAACCTTATGAATGGTTTGAAGCATTTAGgtcaataatgcacaaaaaacatgcattttctgctttttctggctactgcgcttgcgcagatctccacactgATCCAGGGCTTCTATACCAAGCACGCTGCCTCttaagctgattggctctttttgttaaaGGGTGGGtctttatctgtaaacagatGCCATGTTGAGCATTACAGAGAAGAACTCACATTTAGATTAGACACTACTTAAGTATTATTCAGACTAATAAAAGATGAATTGCATGACCAGTCCTGATGGTGAACTGCAATAGTGATGACTGTATCTGCTCTCTGCACGTGACTGTGAATACTGTAATTTCTGTTTCTCTACACTGATGTATTAAATCTTAATATTGCACAAAACCTG

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0043473 pigmentation biological_process
GO:0032259 methylation biological_process
GO:0009790 embryo development biological_process
GO:0005737 cytoplasm cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004637 phosphoribosylamine-glycine ligase activity molecular_function
GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity molecular_function
GO:0004644 phosphoribosylglycinamide formyltransferase activity molecular_function

KEGG:

id description
K11787 GART; phosphoribosylamine--glycine ligase / phosphoribosylglycinamide formyltransferase / phosphoribosylformylglycinamidine cyclo-ligase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144926 lncRNA upstream 143668 30493411 ~ 30528484 (+) True G107267
TU144928 lncRNA upstream 178446 30493001 ~ 30493706 (+) False G107267
TU144919 lncRNA upstream 207221 30401626 ~ 30464931 (+) True G107261
TU144768 lncRNA upstream 216382 30448327 ~ 30455770 (+) True G107128
TU144907 lncRNA upstream 473208 30198295 ~ 30198944 (+) True G107250
TU145013 lncRNA downstream 3928 30715180 ~ 30716606 (+) True G107342
TU145072 lncRNA downstream 21416 30732668 ~ 30732900 (+) True G107389
TU145077 lncRNA downstream 32425 30743677 ~ 30744047 (+) True G107394
TU145079 lncRNA downstream 34179 30745431 ~ 30745631 (+) True G107396
TU145080 lncRNA downstream 49418 30760670 ~ 30790277 (+) True G107397
XM_022674976.1 mRNA upstream 3408 30661999 ~ 30668744 (+) True LOC111193577
XM_022674380.1 mRNA upstream 124791 30540261 ~ 30547361 (+) True LOC111193471
XM_022674973.1 mRNA upstream 220551 29844100 ~ 30451601 (+) True ncam2
XM_022674975.1 mRNA upstream 220551 29844100 ~ 30451601 (+) False ncam2
XM_022674379.1 mRNA upstream 1013730 29656537 ~ 29658422 (+) True LOC111193470
XM_007237759.3 mRNA downstream 550028 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 601488 31312740 ~ 31319149 (+) True adamts1
XM_007237757.3 mRNA downstream 614442 31325694 ~ 31341351 (+) True cyyr1
XM_022674980.1 mRNA downstream 636049 31347301 ~ 31402273 (+) False app
XM_022674979.1 mRNA downstream 636050 31347302 ~ 31402273 (+) True app
TU144751 other upstream 891225 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 1951872 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 2605169 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 2650105 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5302713 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile