RNA id: XM_022674979.1


Basic Information

Item Value
RNA id XM_022674979.1
length 2088
RNA type mRNA
GC content 0.58
exon number 14
gene id app
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 31347301 ~ 31402273 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacaccctctcacactcactcagcctccacacacactcacactctcacacagagacagacagagctgTACACACAGTCTGACAGCAGAAAGCTGGTGAATAACGGGAGAGTCAGGATGTGGGACCGCGGGGTTTTCTTACTGCTCATGGCGCTGGCCTCGGCGGCGGCTCTGGAGGTGCCGTCGGACGAGGGCGCGGGTCTGCTAGCAGAGCCTCAGGTAGCAATGTTCTGCGGGAAGCTCAACATGCACATCAACGTTCAGAACGGCAAGTGGGAGCTGGACCCCTCCGGCACAAAGGGCTGCATCGGCACCAAGGAGGGCATCCTTCAGTACTGCCAGGAggttTACCCAGAGCTGCAGATCACCAACGTGGTGGAGGCCAATCAGCCCGTCAGCATACAGAACTGGTGCAAGAAGGGTCGCAAGCAGTGCCGCAGTCACGTACACATTGTGGTGCCCTACCGCTGTCTGGTTGGAGAGTTCGTAAGTGATGCCCTGCTGGTTCCTGATAAGTGTAAATTCCTGCATCAGGAGCGTATGGACATCTGCGAGAGCCACCTGCACTGGCACACTGTAGCCAAAGAGTCTTGTGGCGACCACACTATGAATCTTCACGATTATGGGATGCTGCTGCCCTGTGGTATTGATCGGTTCCGTGGGGTGGAGTTTGTGTGCTGCCCGGCAGAAACggagagggagacagacagCGCCGACATGGAGGAAGACGACTCTGATGTCTGGTGGGGAGGAGCAGAGGCTGACTACACCGATAACAGTATGGCTCGGGAGGCGGAGCCAGTGGAGCAGACTAAGCCGGAACCTGCAGCAGtagatgaggatgaggaggttgttgaagaagaagaagaagaagaggaggaagaagacacTCTGGATAATGACcaggatggagatggagatatGGAAGATGACGAGGATGAGGAAGATGACGAGATGATCGACGAGCGCAATGGCAACAAGCAGACCACCAGCGTGGCCATGACCACCACCACAACCACTACTACTGAGTCTGTGGAGGAGGTGGTCCGAGAGGTGTGCTGGGCGAATGCAGAGACAGGTCCGTGCAGGGCTATGTTGCCCCGCTGGTATTTTGTGAAGGAGGAGGGCCGCTGCGCTCCCTTCATCTATGGGGGCTGCGGAGGAAACCGCAATAACTTTGAGTCGGAGGAGTACTGCCTCTCTgtctgcagcactgtgtTGCCCACCACCTCCCCCAGCTCTCCAGATGCAGTAGACCGCTATCTGGAGACTCCAGCAGACGAGAACGAGCACACACACTTCCAGAAAGCCAAGGAGAGCCTGGAGGCCAAGCACAGAGAGAGGATGTCTCAGGTGATGAGGGAGTGGGAGGATGCAGAGAGACAGTCTAAGAGTCTGCCTCGTGCTGACAAGAAGGCAGTCATCCAGCACTTCCAGGAGAAGGTGGAGGCTCTGGAGCAGGAGGCAGCCAGCGAGAGGCAGCAGCTGGTGGAGACTCACATGGCGCGGGTGGAGGCTCTGCTGAACGACCGCCGTCGCCTGGCGCTGGAGAACTTCCTCACCGCCCTGCAGGCGGACGAGCCACGGccACGTCATGTGTTCAGTCTGTTGAAGAAATATGTGCGTGCTGAGCAGAAGGACAGGCAGCACACCCTGAAACACTTTGAGCATGTGCGCGTGGTGGACCCCAAAAAGGCTGCCCAGATTCGGCCTCAGGTGTTGACTCACCTGCGTGTGATTGAGGAGAGGATGAACCAGTCTCTGGGGCTACTGTACAAGGTGCCAGGCGTGTTGGAGGATATCCAGGATCAAGTGGAACTGTTGCAGCGTGAGCAGCAGGAGATGTCTGCGCAGTTGGCCTCTCTGCAGAGCGATGTGAGGGTGAGTTACGGTAATGACGCCCTGATGCCGGATCTGCCCGACAGCACCGCCGCGCTGGACCTGCTGCCCTCTGAGGACTCTCAGAGTCTAGGGCTCGACGGCCTGGGCTTCATCCACCCCGAGAGCTTCAACCAGCCCAACACCCAAAACCATGTTGAACCTGTTGATGCTCGGCCCATTCCTGACAGAGGACTGCCCACTCGCCCAG

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0007417 central nervous system development biological_process
GO:0060026 convergent extension biological_process
GO:0001944 vasculature development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K04520 APP; amyloid beta A4 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145181 lncRNA upstream 57891 31288735 ~ 31289411 (+) True G107482
TU145153 lncRNA upstream 145078 31201997 ~ 31202224 (+) True G107463
TU145144 lncRNA upstream 168959 31178086 ~ 31178343 (+) True G107454
TU145140 lncRNA upstream 183795 31162526 ~ 31163507 (+) True G107450
TU145138 lncRNA upstream 193603 31153480 ~ 31153699 (+) True G107448
XM_007237757.3 mRNA upstream 5951 31325694 ~ 31341351 (+) True cyyr1
XM_007237758.3 mRNA upstream 28153 31312740 ~ 31319149 (+) True adamts1
XM_007237759.3 mRNA upstream 46881 31261280 ~ 31300421 (+) True adamts5
XM_022674977.1 mRNA upstream 636050 30672152 ~ 30711252 (+) True gart
XM_022674976.1 mRNA upstream 678558 30661999 ~ 30668744 (+) True LOC111193577
TU144751 other upstream 1566375 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 2627022 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 3280319 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 3325255 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5977863 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile