RNA id: XM_022675032.1


Basic Information

Item Value
RNA id XM_022675032.1
length 2134
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC111193615
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 11986919 ~ 11996727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgaagtgctATGAGGCAGTAATCAGTCCCTCCACAGACAGGGCAGCGGTGGCTAAAAAGCGCTTTACGCTACAGGGCTTCAGCAACCTCAAGAGTCAGAAAGAGCTCCCATCGCCCCCTGGTGGTAAAAGCCTAACTCTTCCCATGGTCACACTCTGTCCTCCAGGATCTCCCACTAGTCCTGACCACAAAACCAAACGCCATGAGATTAAGAGTGATCCCACACCATTTGGCTTCAGAGGGTTCAATAAGGCCTCTCTCTCCATGGATGCCTCAGAGGAAAACGACGGCTACTCCAGTGCTGAGGATCCTCTGAACTCTGACCCTGAGGACGAGGGCAAGAAACTGtctccAGGCAGATATGTTGTGGTGGCAGATTATGATAAAGGAGGAGCTCAGGACCTCTCAGTGAAGAGTGGGGACATGGTGCAGCTCGTCCGAGAGGGCAATGACGGACAATGGTTTGTGCGTAACCTCAAGAACAGTAAGGAGGGCTGGCTTCCTGCTGCTAATCTGCTCACTCTAATTGGAGAGTCAAAGTCCTCACAGTCTCTCACCAGCTCAGAAGGCAGCGGGTCCGGCAACTTGAGCACTTCGTCCAGCTGCAGTGAAACCTACACCAGCTTCTCGGACATCAAACCGTGAACGAGGGGGCCACTCTGGCCCCAGCCTGCCTCTACAGCTCCGCCTGCTGGCAGCTCCTACACATTGCACTTTCTCTTGCTGAGACAGCTCCTCTATGTACTGTATTCAGAGCCACAGCTTTGGCTCTTTGTTTAATACGCGGCTTCATCCTCACCTCCCCACGCTCACCTCCTCCTACTTGTTTGTGTGcaaaagagaaaaggaagaagCTGGACTTGCTgattttatctctttatttttttatttgtcccaAAAGCGAAGCTATTAAAGAGTAAATGACGGCATTAATAGATTTCCTAATGGCCTGATACCTTTGGTTTTAAGAGAGTAGGACATACATGGTTCTCAGGATatttaataaatcatatttttaactGAGAGCAGAGCACACAGGGGCCCAAGCATGTACAGTAATGGCCACTGTAGCAGTCTTTGGTTACAAAagcgcaaaaaaaaatccactcgAGTAAAAGCTGTGACCATTGCACCTCCGCTTGGTGTTAGAGAGTTTGCACTGAGAGCATCAGAACCATTTGGAATGTCCTATTTTCAGGAATGGCcaattattttttgttccttTACAATCCAGCTCCCCTCGCCAGCGCCGTAGACAAAAAACCTGAAAATGGATCAAGATTGTTGGAATCGTGCCTGGTTTCTTGCTATCGAAACAACTGTGAAAAATGTCCCGTCCCATTCACTCTATGTATTAATTGTGAACAGCTGTATATTTTAGGTGAAATTCCTGTATTATAATAAGATTTGTACAGATATTATAACTTTTACCTCATTTTCATTCAGATAACagtgtatgtattgtatattaaataatgttttttttccatgaaaCTGGATTTTGtcatttgtattttgtttgatttattatcattatattattattattattattattattttggtctgcacctttttgtgttatttgtggTCTTCgttactaattattttttttatttatgttttttacagattttattaCCCCACGCTATACTGTACTTTCACATATGAGTGATTCAAATGTGAATTCAGAGGCCAGTAATTAGTGTATAATGCATTCACACAGTAAATCAGATTTAGCTTTTATGATCTTAAAGAAATCATTAGCTGCATTTTAAGCCAAtcagaacaacaacaacaaaaatgacCTAAACAGCATTTTCTATGAAATGTGTTGTTTCCCCAAAGTTGTTTTATCTTCCTGTTTTATCTCTCACATCACTATGCTGAACACTTCGAaagcaaatattttatattttaaatcatatcatgaaaaaaaatctactgtATGTTTTCGATATGgatgcattttacacagcacaTCGTCCTTTTCATTCTCTATTTTCATATGGCATTGTGGTTACGAAGGTATATGTGACTGCTGTCTATGTATATGTGTACATATGTATTTAAGAGGATGTATGACTTGTATGAATAAAGAGAATTAAGCTTGAATAAAGTCCACAGAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138929 lncRNA upstream 30 11986586 ~ 11986889 (+) True G102809
TU138919 lncRNA upstream 208161 11771576 ~ 11778758 (+) True G102804
TU138920 lncRNA upstream 209933 11770771 ~ 11776986 (+) True G102805
TU138725 lncRNA upstream 271866 11714694 ~ 11715053 (+) True G102671
TU138683 lncRNA upstream 314407 11590123 ~ 11672512 (+) False LOC111193531
TU138943 lncRNA downstream 12550 12009277 ~ 12024758 (+) False cab39l
TU138954 lncRNA downstream 49499 12046226 ~ 12050713 (+) True G102822
TU138946 lncRNA downstream 66809 12063536 ~ 12067895 (+) True G102816
XR_454929.2 lncRNA downstream 129194 12125921 ~ 12127541 (+) True LOC103046989
TU138993 lncRNA downstream 141767 12138494 ~ 12138702 (+) True G102850
XM_022674704.1 mRNA upstream 353144 11631733 ~ 11633775 (+) True LOC103035965
XM_022674701.1 mRNA upstream 536535 11404244 ~ 11450384 (+) False LOC103036596
XM_022674700.1 mRNA upstream 536536 11404244 ~ 11450383 (+) True LOC103036596
XM_022674702.1 mRNA upstream 536537 11404244 ~ 11450382 (+) False LOC103036596
XM_022674703.1 mRNA upstream 536537 11404244 ~ 11450382 (+) False LOC103036596
XM_022674707.1 mRNA downstream 3912 12000639 ~ 12022227 (+) False cab39l
XM_022674708.1 mRNA downstream 14507 12011234 ~ 12024764 (+) True cab39l
XM_007251327.3 mRNA downstream 59383 12056110 ~ 12058454 (+) True arl11
XM_007251371.3 mRNA downstream 360303 12357030 ~ 12378962 (+) True LOC103032463
XM_007251339.2 mRNA downstream 514990 12511717 ~ 12522303 (+) True cryzl1
TU138581 other upstream 692104 11287869 ~ 11294815 (+) False map2k7
TU138311 other upstream 1460759 10525677 ~ 10526160 (+) True G102411
trnar-ucu_1 other upstream 3152988 8833840 ~ 8833931 (+) True trnar-ucu_1
TU137786 other upstream 3267684 8714839 ~ 8719235 (+) True G102015
TU137208 other upstream 4840579 7144802 ~ 7146340 (+) True G101622
TU139745 other downstream 1932338 13929065 ~ 13935667 (+) True G103376
TU139893 other downstream 2263898 14260625 ~ 14261539 (+) True G103490
TU139970 other downstream 2621908 14618635 ~ 14619082 (+) True G103551
TU139988 other downstream 2694316 14691043 ~ 14692199 (+) True G103561
TU140510 other downstream 4454448 16451175 ~ 16458209 (+) True G104000

Expression Profile