RNA id: XR_002650609.1


Basic Information

Item Value
RNA id XR_002650609.1
length 464
lncRNA type intronic
GC content 0.40
exon number 2
gene id LOC111193572
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28813405 ~ 28814051 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGCAGTAGGGAGCCCTGTTACCATTAACCTTGGCCTTAATCAAACTGATGAGCTTGTATGGAATCACAACTCTCAGAGAGTGTTTAAAGGAAATGTTAGCGCATTaccaacaaaactaaacaacGTGAAGCTGACCAGTGATGGGTCCCTTATAATcagttctgtaaaaaaagaagataatgGCGACCATGAGTTTGAAGCTTTCCTTTCGAATGGCACatctaaagcaaaaaaaacaatcacactGTGTGTTCATgaaaagcCACCTAAGCCAACGGTGAATGTCACATTTACAGATGGGACACTTTACATCAGCTGTGAAGTTAAAGACAAAACCGGACGGACCTTCAGTTGGtataaaaatgggaaaaaaattgatGGAAATACTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAAAAACCCATTCCAAGTGAAAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144330 lncRNA upstream 473 28809335 ~ 28812932 (+) False G106803
TU144297 lncRNA upstream 34925 28778182 ~ 28778480 (+) True G106800
TU144296 lncRNA upstream 36368 28776546 ~ 28777037 (+) True G106799
TU144292 lncRNA upstream 78434 28734295 ~ 28734971 (+) True G106795
TU144289 lncRNA upstream 85685 28727286 ~ 28727720 (+) True G106792
TU144337 lncRNA downstream 15248 28829299 ~ 28850608 (+) True G106807
TU144349 lncRNA downstream 139535 28953586 ~ 29063678 (+) True G106817
TU144383 lncRNA downstream 158681 28972732 ~ 28974394 (+) True G106838
TU144366 lncRNA downstream 236384 29050435 ~ 29052453 (+) True G106822
TU144361 lncRNA downstream 238480 29052531 ~ 29055183 (+) True G106819
XM_022674952.1 mRNA upstream 21414 28785964 ~ 28791991 (+) True LOC111193571
XM_022674375.1 mRNA upstream 89579 28703067 ~ 28723826 (+) True LOC103027743
XM_022674374.1 mRNA upstream 110484 28702012 ~ 28702921 (+) True LOC111193466
XM_022674373.1 mRNA upstream 116309 28692844 ~ 28697096 (+) True LOC111193465
XM_022674372.1 mRNA upstream 121100 28689555 ~ 28692305 (+) True LOC111193464
XM_022674951.1 mRNA downstream 27128 28841179 ~ 28865225 (+) False LOC111193570
XM_022674950.1 mRNA downstream 27129 28841180 ~ 28865221 (+) True LOC111193570
XM_022674378.1 mRNA downstream 311822 29125873 ~ 29127641 (+) True LOC111193469
XM_022674953.1 mRNA downstream 335014 29149065 ~ 29159524 (+) False LOC111193573
XM_022674957.1 mRNA downstream 394500 29208551 ~ 29238624 (+) False LOC103024513
TU144257 other upstream 93125 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 746422 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 791358 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3443966 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 966275 29780326 ~ 29780927 (+) True G107117

Expression Profile