RNA id: TU222157


Basic Information

Item Value
RNA id TU222157
length 2777
lncRNA type read_through
GC content 0.35
exon number 6
gene id nostrin
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 131108 ~ 174925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTCGTGTAAAGAACCACTGTCCAATTAAAATTCAAAATGGAAAGGCGATAAAAGGTTTTTGTGTGATTGCATTTGTTGTTAAGGACTAACAACCTTACTGTCTGTTTTCTACTGTCTACGGTCATGTACTTAATGTTGTGTCTGTGCTAAATTTAAAAccatcttcaaaaaaaaaaaaaaaaaAAAAAATGCACAGATATacgtgctggaacacagaatcttctcgctatatttattttcttgctccCGCGCCACACAGCTCTGGCCAGTCAGAGGAGACAACTTGCTAGGGAGGTTTACtggggagaaaacgctccaagtaaatgatctcatcaactgatccagaccatagaaatTAACTAAGGACTGGAGAGAACAGCGATGTCCTCTGAAAGCACATCAGACCTCGGtcaaagaaacacagaggaaactgagcagATACTTGATGCGAACACTTTAAAACTGGATCTTTTGGAGGCCACACACTGCAAACTGAACCAAGCTTTGATGGATTTAGAGGGAAAACCAAGGCCTTTACATCGGTTTAGTAACAGCATCACGAAATTCAAAGATAAGGTGCTGAGTTTTGCAGTATCGGTAAATGCAAGGCTTTATATGACTATTCATCTGAGAGAACTGACGAGTTAAACATTAAGGAAGGAGATCTTCTTAACATCCTTCAGAAGGATGATAGTGGGTGGTGGTTTGGAGAACTGAATGGGGAGAGAGGGCACTTTCCTTCCACATATATTGAGGAGCTGCCCATCTTAAACGTACCAAAGTCTTCTGATGCTTAACTCATGGAAAAGAtagatttttgtattattatattgtcaCGCTGAAGCACTTTGTATATGTGACCATATCAAAGCGTACACTTTGTTTAGGGaccttgattttatttttttaagcgtTAAATAAAGCAGCGATGCACCCCACTCTATTTTGCCAGCTAAACCTTTAGTACCTGAGAAACTAGATGCGCTATAAAAAAAATTTGGTTAAAACTGTTCACTTGCAACCAACTTTTATCTGCTTTCATTTATCTGTGGAATTTGTTGATGAAATTTAAATGCATAAACTGTTGTTGTAGCTGAAGCTCTGTCAAATTGtttttctctggtctgaatctattatgtttgtaaatgttaaagttgtTTTCACTACCTGAGTGCAATTTCTGAATTCACACCCACCCAAACAAATCACACCAAGGGTGAAAATGAGACACAATCCAATTTAACTGGATAAGAAAATGCAGGcgtgaaagcacccttaattAAATGATAACACGGTGTTTTCTCATTGTTTTGATGCTCTTTGTATTAAGATCATagtatatagctctggaaaataagagaccacttaaaaataatcaagaggaagatggatgatcaatcacaagccatcaaaccaagctgaactgctttaattttttgcaccaggagtggcataaaattatccaaaagtagtatgtaagactggtggaggagaacatgccaagatgcatgaaacctgattttaaaaacagggttattccaccaaatattgatttctgaactattaaaactttatgaatgttatatcagccatttctcattttctacaaataaatgctctaaatgacaattttaatttttaattttggagaaatgttgtccgtagttatATAAATAGTTATATAGTAGAATaaaaattttactcaaacatatacctataaatagcaaaatcagaaaaactgatttagaaactgaagtggtctctttatttttttacagagctgtatgtgttcaATTGCAGACCACACTTTaagttttaagaataaaaagggTGCCATAAAAAGTGTCATATATAAGAATCACATTTGGATCCTAAAGTATCATCGGTGTAATAGAAATGCCTGAGTGTAACAAGGTTTCATGTTTTTAGACCTTTAAAATGTCATTTATATTTACACCTCCTCTCTGTTACATACATGGCTTTCTTAAGTTCTAGTGTTTTTTTCCGAATGCAATTGCACAAAGAACCATTTACAGCtccactcttttttttgtctgtgtaaTTCATTCTAGTtgctttttaatcactttaCCCAGTCTacataataaaaacagcttTGGATAAAACGTGTAACAagatatttgcattttattatatacaaaaGCACAAACAAATGACATGTAACATGTACAatgaaatgttaataaaataaacatcactTATGTGGACTACTAATAAGCTGATTCAAACAAAACCagattaagtttaagtttagtttgtATGAGACTATGAAAAGAATTTAAATGCACTGGATCCTGTCTACCAATCAGATTAGGTGGTCTTTGTAGCATTGTGTAGTGCCACAAACTCTTTTCTGACATTGGCGAGGAAGGCTGAGAAGTTGTTGGTCTCCTGCAGTCTACGCTCCAGATAATCCATCTGCGCCAGCGGAGGATCACAGGAAACAACTGCAAAAGCAAATGACATACTAATCACACATTGCTACTACTTCTTGTTCTTTATACAAACatgtttattactttattttgtattagtCATGAGCTAAAGGTGTTCTAATGACCACTTCAGGATCAGACAAgcactttgtgtgtaatgaaGTATCATTTCTTTACCAGAAAATCACAATtcgccatgttttctttctccaaaattcaaagatttctgtattatttttattaggtaCTCAGATCTATTATAAATGCACAGCAAAGGAGAGAAAACTTTATCTTGCACATTATAGCTTCATTCATCATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222223 lncRNA downstream 311009 485934 ~ 486739 (+) True G164118
TU222233 lncRNA downstream 332920 507845 ~ 520172 (+) True G164123
TU222322 lncRNA downstream 527356 702281 ~ 716718 (+) True G164194
TU222402 lncRNA downstream 664956 839881 ~ 845477 (+) True G164253
TU222426 lncRNA downstream 769672 944597 ~ 944874 (+) True G164276
XM_022680021.1 mRNA downstream 9523 184448 ~ 366848 (+) True tanc1
XM_007230403.3 mRNA downstream 438165 613090 ~ 626626 (+) True tank
XM_007230408.3 mRNA downstream 485676 660601 ~ 666804 (+) True tbr1
XM_007230404.3 mRNA downstream 500135 675060 ~ 750486 (+) False slc4a10
XM_007230407.3 mRNA downstream 500136 675061 ~ 750486 (+) False slc4a10
TU222238 other downstream 363354 538279 ~ 572193 (+) True G164126
TU222476 other downstream 1303781 1478706 ~ 1480734 (+) False LOC103047444
TU222588 other downstream 1647943 1822868 ~ 1834634 (+) False LOC103028062
TU222580 other downstream 1659888 1834813 ~ 1838087 (+) False LOC103028062
TU222840 other downstream 2315119 2490044 ~ 2492991 (+) True G164539

Expression Profile