RNA id: XM_022680020.1


Basic Information

Item Value
RNA id XM_022680020.1
length 2207
RNA type mRNA
GC content 0.42
exon number 16
gene id nostrin
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 131108 ~ 174925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCCAGACTGGAGATGAAGGACCCACTGGGAACTTGCACTCCTGCTGTACGAGGACCTCAAGAGATTCTCGAAAAATGGAGAGACTTTTTGCAAAGAACTTGTAACAGTTTTCCAGCAACGATCAGAGCTGGAGATCAACTATGCCAAAGGCCTGCAGAAGCTGGCAGGGAAACTCATCAAAGTATCCAAAgccatgagtaacaaCTCAACGTACAATGCCTGGTCTCTGGTGTCAAATGAGATGTTCTCCATAGCAGATGCTCACAGAATACTGGGACATGCTCTACAACAAGATACCGTTCTGGAGATCCGGCAGATCCTGGATGAACACACCAAAAGGAAGAAGCCaCTGGACAACACCATTGAAAAATCTGGAAAACTTGTCGTTACAAACTGGAATGAACAACTGAAGGTGAAGAAAAAGCTGAGTGCTTTAACCAGAGAACATGAGGCACTGTTCAGTTTTGTGGAAAAGAACAAACAGATAtgcacagagaaagagaagcaaAAGATGTTTAACAGACTGACTaagtcagcagagcttcaggtCAAGGTTGATGAGGAGTACTTCAATATGAACATGGACGGCCATAAGATGAGACTGAAGTGGGAGAACACACTGAAATCCTGCTATCAGatcatTCAAGAGCTGGAGAAGCAAAGGATAGAGACTCTGTGCAGCACACTAAATAAATATAGTCTCCACATGTCCAGCTATAGCCAAACTCTTCTTCAAAGTGAGAAACAGATCGAGGAGGCCATTGGTAGAGTGGATGTGGAGAAAGACCTCCAGACTCTGGTGGAAGACACCTGTGTTACTGCAGAAGATACAGAGGCTGAATTTCTGATGGCTGATTACTTTGAGGAGGATGGGAGGACAAtaatggggagagaaagaagacGAGACGCGTTAAAGATTAAACTTCAGCGACTGGAGGAATGGATCACAAGAACTAAGGAGGATAAagatgGACTGGAGAGAACAGCGATGTCCTCTGAAAGCACATCAGACCTCGGtcaaagaaacacagaggaaactgagcagATACTTGATGCGAACACTTTAAAACTGGATCTTTTGGAGGCCACACACTGCAAACTGAACCAAGCTTTGATGGATTTAGAGGGAAAACCAAGGCCTTTACATCGGTTTAGTAACAGCATCACGAAATTCAAAGATAAGgaCTGTGAGCACAGCACAGTCAAACTGTCACGACCAGTTAAGATCAAAAAGACACCACTCAGATCACGGCAGTCTTTGAGGACTTCAATCATGTATAAAGGCCCTGCTAAAAATGGAGCGTCCCGCCAGGACTCTGCTCCATCTACAGGGGCTGGCACTGCATCAGCACAACTCAGCCCCACAGAGCCTCAGAGAGCTGAGCTTAACGGAGCTCTGCCCCACTCTGAAGATGAAGCTGGCAAAGGTGCTGAGTTTTGCAGTATCGGTAAATGCAAGGCTTTATATGACTATTCATCTGAGAGAACTGACGAGTTAAACATTAAGGAAGGAGATCTTCTTAACATCCTTCAGAAGGATGATAGTGGGTGGTGGTTTGGAGAACTGAATGGGGAGAGAGGGCACTTTCCTTCCACATATATTGAGGAGCTGCCCATCTTAAACGTACCAAAGTCTTCTGATGCTTAACTCATGGAAAAGAtagatttttgtattattatattgtcaCGCTGAAGCACTTTGTATATGTGACCATATCAAAGCGTACACTTTGTTTAGGGaccttgattttatttttttaagcgtTAAATAAAGCAGCGATGCACCCCACTCTATTTTGCCAGCTAAACCTTTAGTACCTGAGAAACTAGATGCGCTATAAAAAAAATTTGGTTAAAACTGTTCACTTGCAACCAACTTTTATCTGCTTTCATTTATCTGTGGAATTTGTTGATGAAATTTAAATGCATAAACTGTTGTTGTAGCTGAAGCTCTGTCAAATTGtttttctctggtctgaatctattatgtttgtaaatgttaaagttgtTTTCACTACCTGAGTGCAATTTCTGAATTCACACCCACCCAAACAAATCACACCAAGGGTGAAAATGAGACACAATCCAATTTAACTGGATAAGAAAATGCAGGcgtgaaagcacccttaattAAATGATAACACGGTGTTTTCTCATTGTTTTGATGCTCTTTGTATTAAGATCATagtatatagctctggaaaa

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0051489 regulation of filopodium assembly biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222223 lncRNA downstream 312431 485934 ~ 486739 (+) True G164118
TU222233 lncRNA downstream 334342 507845 ~ 520172 (+) True G164123
TU222322 lncRNA downstream 528778 702281 ~ 716718 (+) True G164194
TU222402 lncRNA downstream 666378 839881 ~ 845477 (+) True G164253
TU222426 lncRNA downstream 771094 944597 ~ 944874 (+) True G164276
XM_022680018.1 mRNA upstream 3876 105214 ~ 157054 (+) True cers6
XM_022680021.1 mRNA downstream 10945 184448 ~ 366848 (+) True tanc1
XM_007230403.3 mRNA downstream 439587 613090 ~ 626626 (+) True tank
XM_007230408.3 mRNA downstream 487098 660601 ~ 666804 (+) True tbr1
XM_007230404.3 mRNA downstream 501557 675060 ~ 750486 (+) False slc4a10
XM_007230407.3 mRNA downstream 501558 675061 ~ 750486 (+) False slc4a10
TU222238 other downstream 364776 538279 ~ 572193 (+) True G164126
TU222476 other downstream 1305203 1478706 ~ 1480734 (+) False LOC103047444
TU222588 other downstream 1649365 1822868 ~ 1834634 (+) False LOC103028062
TU222580 other downstream 1661310 1834813 ~ 1838087 (+) False LOC103028062
TU222840 other downstream 2316541 2490044 ~ 2492991 (+) True G164539

Expression Profile