RNA id: TU222238


Basic Information

Item Value
RNA id TU222238
length 657
RNA type TUCP
GC content 0.40
exon number 3
gene id G164126
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 538279 ~ 572193 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatacatacagTCCTGCTCATCATTATTGGCACCCATGAAGTTTAAGTACATATTGTGGAAATTCCCCCTGAAAAAAGTAGTCGACTGAAACAGTTTTTTGTATAGAGCACTcgtatttaaaacaaaagagaaaattatgaACAACAATTTAAAGCAACAAACAATGTGAgggaaaaaCTTTACACTAAATTAGtatgaaaacacattttcactcACCTGTGGCAAATCGCAAAGGATAATCACCTGTGACAAATTATCAGTGCCCATGTGACATGAATTAGCCAATGAATGATGACTTCAGAGTTTTAAAAAGCCAAACCTTGGGCCATGTTCTTTTGTTACAATGGTGAAGACAAAGGAGCTGTGTGAGGACATCAGAAGTGCTATTATTAGCAAACACAAGACTTCCAAAGGGTATAAGGCCATCTCCAAAGACCTTGGTGTCCCTGTTTCAACAGTGCGCAATGTTATTAAGAAGTTTGCCAAGCATGGAACTGTCAAGAACCTTCCTGGACGTGGAGGAAAGAGGAAAATTGACGAGAGAAGTCTTCGAAGGTTGGTGCGAATGGTGGAAAAAGAACCAAGGcaaacatccaaagaactgaaGGTCAACCTGGAACAGTCTGGGGTCATGGTTTCAACAAGTACCATACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222233 lncRNA upstream 18107 507845 ~ 520172 (+) True G164123
TU222223 lncRNA upstream 51540 485934 ~ 486739 (+) True G164118
TU222157 lncRNA upstream 363354 131108 ~ 174925 (+) True nostrin
TU222322 lncRNA downstream 130088 702281 ~ 716718 (+) True G164194
TU222402 lncRNA downstream 267688 839881 ~ 845477 (+) True G164253
TU222426 lncRNA downstream 372404 944597 ~ 944874 (+) True G164276
TU222432 lncRNA downstream 379872 952065 ~ 952429 (+) True G164282
TU222434 lncRNA downstream 417104 989297 ~ 989513 (+) True G164284
XM_022680021.1 mRNA upstream 171431 184448 ~ 366848 (+) True tanc1
XM_022680019.1 mRNA upstream 364776 160759 ~ 173503 (+) False nostrin
XM_022680020.1 mRNA upstream 364776 160930 ~ 173503 (+) False nostrin
XM_022680018.1 mRNA upstream 381225 105214 ~ 157054 (+) True cers6
XM_007230403.3 mRNA downstream 40897 613090 ~ 626626 (+) True tank
XM_007230408.3 mRNA downstream 88408 660601 ~ 666804 (+) True tbr1
XM_007230404.3 mRNA downstream 102867 675060 ~ 750486 (+) False slc4a10
XM_007230407.3 mRNA downstream 102868 675061 ~ 750486 (+) False slc4a10
XM_007230405.3 mRNA downstream 115411 687604 ~ 750486 (+) True slc4a10
TU222476 other downstream 906513 1478706 ~ 1480734 (+) False LOC103047444
TU222588 other downstream 1250675 1822868 ~ 1834634 (+) False LOC103028062
TU222580 other downstream 1262620 1834813 ~ 1838087 (+) False LOC103028062
TU222840 other downstream 1917851 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 5572744 6144937 ~ 6145969 (+) True G165406

Expression Profile