RNA id: TU222322


Basic Information

Item Value
RNA id TU222322
length 563
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G164194
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 702281 ~ 716718 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gattttgtcaggtattgtcataaatatttacacataacttatatctctcctgaaaagcttttattttagtcagaaacacgcttgtgtttactttatctgagagaaagatgtttttttaattcaatggaaagcaacaggtgtagtcaattataagtttaagatttttaatccacctcactgtgatctatagtcagtgttctcaagtcacactgacacacgcatttcagcgagttcacacgctctcacctgcgcgcacccacccctccgttagatacagatacaaaacctgcgcgcccaacccccgccccccctcccccgttggacagataaaaacagtgatcacactcccgccgactgcgctcatgcagtggctatctctatttaaatgaataggatgcgctgtgttggtgccgcgccatttgcgtagcgcgctgcgctatttgcgtagcgcgcgcgggagggatcgtcgatcctctttttgacttcgatactcgagatcgtgacctcatttcgattcgatttcgataaaatatcgagatcgtgacacccctaATTTTAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222233 lncRNA upstream 182109 507845 ~ 520172 (+) True G164123
TU222223 lncRNA upstream 215542 485934 ~ 486739 (+) True G164118
TU222157 lncRNA upstream 527356 131108 ~ 174925 (+) True nostrin
TU222402 lncRNA downstream 123163 839881 ~ 845477 (+) True G164253
TU222426 lncRNA downstream 227879 944597 ~ 944874 (+) True G164276
TU222432 lncRNA downstream 235347 952065 ~ 952429 (+) True G164282
TU222434 lncRNA downstream 272579 989297 ~ 989513 (+) True G164284
TU222562 lncRNA downstream 990163 1706881 ~ 1708641 (+) True G164376
XM_007230408.3 mRNA upstream 35477 660601 ~ 666804 (+) True tbr1
XM_007230403.3 mRNA upstream 75655 613090 ~ 626626 (+) True tank
XM_022680021.1 mRNA upstream 335433 184448 ~ 366848 (+) True tanc1
XM_022680019.1 mRNA upstream 528778 160759 ~ 173503 (+) False nostrin
XM_022680020.1 mRNA upstream 528778 160930 ~ 173503 (+) False nostrin
XM_022680044.1 mRNA downstream 687383 1404101 ~ 1496380 (+) True LOC103047444
XM_007233774.3 mRNA downstream 1002574 1719292 ~ 1724952 (+) True LOC103030276
XM_022680046.1 mRNA downstream 1027688 1744406 ~ 1760560 (+) True tspear
XM_007233770.3 mRNA downstream 1058733 1775451 ~ 1783041 (+) False LOC103029311
XM_007233772.3 mRNA downstream 1058733 1775451 ~ 1783041 (+) False LOC103029311
TU222238 other upstream 130088 538279 ~ 572193 (+) True G164126
TU222476 other downstream 761988 1478706 ~ 1480734 (+) False LOC103047444
TU222588 other downstream 1106150 1822868 ~ 1834634 (+) False LOC103028062
TU222580 other downstream 1118095 1834813 ~ 1838087 (+) False LOC103028062
TU222840 other downstream 1773326 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 5428219 6144937 ~ 6145969 (+) True G165406

Expression Profile