RNA id: TU222432


Basic Information

Item Value
RNA id TU222432
length 365
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G164282
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 952065 ~ 952429 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcagcaaaggacgaggacgtgaatcacttatctaaccagcctgtactgatttctgcccccaataaccctttcaataacctccaatagcctttaatagtcttcagtagccttcaacagtctaaccttgcagccgtgtttttaatgtaatccgagcagtgactccgggacggctgctctaaactgctgctgttagctgcttgggctgaaagatgaactgtagagagctgtattatccgtttagtggggttaaaacctttatttcctacacagaaaactgtaaaaaaaaaaaaacgctccagactggctcagctgagccctgtagcccgtggctgggctgtagctctgactgagtaaagacagcgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222426 lncRNA upstream 7191 944597 ~ 944874 (+) True G164276
TU222402 lncRNA upstream 106588 839881 ~ 845477 (+) True G164253
TU222322 lncRNA upstream 235347 702281 ~ 716718 (+) True G164194
TU222233 lncRNA upstream 431893 507845 ~ 520172 (+) True G164123
TU222223 lncRNA upstream 465326 485934 ~ 486739 (+) True G164118
TU222434 lncRNA downstream 36868 989297 ~ 989513 (+) True G164284
TU222562 lncRNA downstream 754452 1706881 ~ 1708641 (+) True G164376
TU222569 lncRNA downstream 807502 1759931 ~ 1760554 (+) False tspear
TU222579 lncRNA downstream 850358 1802787 ~ 1838087 (+) True LOC103028062
TU222581 lncRNA downstream 850358 1802787 ~ 1838087 (+) False LOC103028062
XM_007230404.3 mRNA upstream 201579 675060 ~ 750486 (+) False slc4a10
XM_007230407.3 mRNA upstream 201579 675061 ~ 750486 (+) False slc4a10
XM_007230405.3 mRNA upstream 201579 687604 ~ 750486 (+) True slc4a10
XM_007230408.3 mRNA upstream 285261 660601 ~ 666804 (+) True tbr1
XM_007230403.3 mRNA upstream 325439 613090 ~ 626626 (+) True tank
XM_022680044.1 mRNA downstream 451672 1404101 ~ 1496380 (+) True LOC103047444
XM_007233774.3 mRNA downstream 766863 1719292 ~ 1724952 (+) True LOC103030276
XM_022680046.1 mRNA downstream 791977 1744406 ~ 1760560 (+) True tspear
XM_007233770.3 mRNA downstream 823022 1775451 ~ 1783041 (+) False LOC103029311
XM_007233772.3 mRNA downstream 823022 1775451 ~ 1783041 (+) False LOC103029311
TU222238 other upstream 379872 538279 ~ 572193 (+) True G164126
TU222476 other downstream 526277 1478706 ~ 1480734 (+) False LOC103047444
TU222588 other downstream 870439 1822868 ~ 1834634 (+) False LOC103028062
TU222580 other downstream 882384 1834813 ~ 1838087 (+) False LOC103028062
TU222840 other downstream 1537615 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 5192508 6144937 ~ 6145969 (+) True G165406

Expression Profile