RNA id: TU222579


Basic Information

Item Value
RNA id TU222579
length 2578
lncRNA type read_through
GC content 0.39
exon number 4
gene id LOC103028062
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1802787 ~ 1838087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcacAATGCTGTGTGAATACTGGAATCTAAGCGTATTCGATTATTTGCACTGTTCGATCcgtaaaaaaaaccaaaaagaaGGATGACCACTCAGAGCTCCACTGTCATGGTTGCAGACCCAAGACATGAACTTCAACACTGCAGCAGAacggaaataaagaaaatatatggcATTTCCTGTCCTGCTAACAAAACTGAGAAGACAAAAGATGAATCAGATTTGGTGTGAAGTTTCactaagtaaaaaaacacactctGTAATGCTCTGTACTGTTCATATGATTCACACTCTTATTCTGACAAACTGTAATACACTGCAAGAAGCCTAGGGGGCACTATACAATGCTATATAgagttcatatgatccacacacaaattctgacagattgtaatacactacagaaagtatatggggcgctctataatgctccataatgttcatataatccacatgctcattctgacagattgtAATACACGACAGAAAGTATAGGGGGGGctctataatgctctataatgctccaTAATGTTCATATAATCCACACACTAATTCTGATAAACTGTAATTCACTGCAGAAAGCATAgagggcactctataatgctctataatgttcacaTGATCCACACATTCATTCTGacaaactgtaatacactacaggaagtatagggggagctctataatgctgtataatgtTCACatgatccacacactcattctgataaactgtaatacactacaggaagtatagggggagctctataatgctgtataatgtTCACATGATCCACACATTCATTCTGacaaactgtaatacactacaggaagtatagggggagctctataatactgtataatgttcACATAATCCACATGTTCATTCTGATAAACTGTAGTTTACTACAGGAAGactagggggcgctctataatgctctataatgttcacatgatccacacactcactctgatAAAcggtaatacactacaggaaccCTCGGTGTGGAAATAGTGATCAGTTGCAGCCCTAAATACAAAAcagcattttctctctctctggctggtTTTGGACACATTGGATTGttgaattctgaattatttgaCAGGTCTGATCTCGGGAACTCTCACAGGTCGTCTCACAGTTTCTTCCACTGTGTATATTAAAACGTTACCTAGAACACATAAACAGATTCTGGTTTACGTCACCACAACCCTCACCATGTCTAAAACACTCACAAACAAGCACTAGCCTATAACCAGGCTGCATCACTGCACATCAAAcgtagtaaaagcagtagtattattcAGTTTATTATCATCACTTCTGTCTGTTTCCATATCCTTAAAGGAGACCTAGGAAGACTCCACTGCTGACACTTCAAATATGAGAAACTTGGAGCAATTTGCCAAAGAAGAGTGGTACAAAATTACATTTGAGATGTTTAAGAAGCTTGTCGATGGTTTTAGGAAGTGATcgatttattagttttttttccccaaagggtgtgcaaccaaatataatataatatattacaatatttgtgtgttgttgcaatacacacataatatatgtgtgtaatgAACTTGCAATAATTGTTTGGTAGAAATACTAAtttatcagttaaaaaaaagcttcacaAAAACCTTCTGACcttatttttgttcttaaaatGGACCATTTcccttctcttttttatataattttctacCAATTTACaattggccaattacccaacttactcattaggactccccctatcactaataatgctccaacaccaggagggtgaagaacagcatatgcctcctctgatacatgtgaagtcagactccgcctcttttcggaggaaagcgcagcgacacggttctgatacatcagctcacagacgcaaccttgtgctgatccacatcaccctaggagtgatcaggggaaagagtgccatctaccgtatccacccagagagagagcaagaccaattgtgcactctcagggctccagcagccgatggcaagctgcatgaccatgATTCGAACCAGAGATCAaacctcctgatcatagtggcagcaccatagtctgctggaccactcgaagcCCCCGTTTCCCTTCTTTAAATCAAATCAGTAATGTCTGATTCgcgtaaaaaaaaattaatacacaAATACTCTAATGTACAACTCTGTTAtggtttaaaagtgtttaaaagccAAGGTTCTAAGTGGTTCTGTGTGGTTTCTGAGGACTTTAGGGATAAAATATGAAGCAGATTCCAGGGTAACTgagtaaatctgattaaatgCTGATCTGTTTTTATTCTGAGAGTTGTTTCTGTGTGGAGTTGAGTTCTATAGTAAGAGTACTCTGCTGAAAAACTGCTTCTCACTGTGTCTTTCAGTAAAGAGGATTAATGATtaccaacacacacattcacacacctcACTGTCACTCTGCAGTGTTCACTCTGAATCactctttattataataatctcactctttctctcattttcttatAAAGACCTGAACTGTTCACCTTCTTCTGTGCTGGTCTTTTCTCAGagtttgtgtttattatgaCGCTGATATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222569 lncRNA upstream 42233 1759931 ~ 1760554 (+) False tspear
TU222562 lncRNA upstream 94146 1706881 ~ 1708641 (+) True G164376
TU222434 lncRNA upstream 813274 989297 ~ 989513 (+) True G164284
TU222432 lncRNA upstream 850358 952065 ~ 952429 (+) True G164282
TU222426 lncRNA upstream 857913 944597 ~ 944874 (+) True G164276
TU222597 lncRNA downstream 38357 1876444 ~ 1877085 (+) True G164400
TU222607 lncRNA downstream 64979 1903066 ~ 1906873 (+) True G164404
TU222720 lncRNA downstream 277756 2115843 ~ 2118502 (+) True G164475
TU222725 lncRNA downstream 341015 2179102 ~ 2180592 (+) True G164479
TU222695 lncRNA downstream 354728 2192815 ~ 2193188 (+) True G164467
XM_022680049.1 mRNA upstream 6040 1783878 ~ 1796747 (+) False LOC103028997
XM_022680047.1 mRNA upstream 6040 1783880 ~ 1796747 (+) True LOC103028997
XM_007233770.3 mRNA upstream 19746 1775451 ~ 1783041 (+) False LOC103029311
XM_007233772.3 mRNA upstream 19746 1775451 ~ 1783041 (+) False LOC103029311
XM_007233771.3 mRNA upstream 19746 1775451 ~ 1783041 (+) False LOC103029311
XM_022680053.1 mRNA downstream 32399 1870486 ~ 1878855 (+) True nup35
XM_022679996.1 mRNA downstream 42061 1880148 ~ 1882693 (+) True LOC111194854
XM_007233764.3 mRNA downstream 255262 2093349 ~ 2191914 (+) True znf804a
XM_022680063.1 mRNA downstream 602569 2440656 ~ 2473897 (+) True LOC103024889
XM_022680066.1 mRNA downstream 765971 2604058 ~ 2655714 (+) True kansl1l
TU222476 other upstream 322053 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1230594 538279 ~ 572193 (+) True G164126
TU222840 other downstream 651957 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 4306850 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 4322313 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 4501908 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 4501908 6339995 ~ 6345403 (+) False wdr4

Expression Profile