RNA id: XM_022680650.1



Basic Information


Item Value
RNA id XM_022680650.1
length 703
RNA type mRNA
GC content 0.58
exon number 3
gene id LOC103028062
representative False

Chromosome Information


Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1802787 ~ 1838087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AGCGGGGCGCGCGGGCAGTGCCGGTGCAGGGCTCGGAGCGGCAGGTGATGGGAGAGAGCGCGCGCGTGCGGGTGAGGTAGACGGGGTGATGGtgaaggtgatgatgatgatgggctCCGGGATGAAGATGAAAAAGGATGAAGCGCAGGCTCTGGCGCGGAGCTGCGCGAGCAGACCGGATTTTCTCCCGTGCGACGGATCGGTGTGCCCCACGCACACGCACGGCAAGTGCTTCAGACTGCACTGGTGCTGCCACCTGGGCTGGTGCCACTGTAAATACGTCTACCAGCCCATGACGAGCGTGGGTCAGTTACCCAGCACCGCCATCCCCGCTGCTCCGTCATTTTACACGGACACCATCGATCTGTCCATCTCTCTGACCGAACGTTTCCTGCGCATCGCTCCCTGCTTCAGACCGCCCCTCTACCCAGAATACCCCCGGTACTGCAACATCGCCGAGCTCTTCATAGACGACTACATCGTCAAACGCATCAACGGCAAGATGTGCTACGTTCAGAGGCCGGTCCCTCAGATggaagccccgcccactcctcatccacGTCTGATCTCGGGAACTCTCACAGGTCGTCTCACAGTTTCTTCCACTGTGTATATTAAAACGTTACCTAGAACACATAAACAGATTCTGGTTTACGTCACCACAACCCTCACCATGTCTAAAACACTCACAAACAAGCACTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222569 lncRNA upstream 62284 1759931 ~ 1760554 (+) False tspear
TU222562 lncRNA upstream 114197 1706881 ~ 1708641 (+) True G164376
TU222434 lncRNA upstream 833325 989297 ~ 989513 (+) True G164284
TU222432 lncRNA upstream 870409 952065 ~ 952429 (+) True G164282
TU222426 lncRNA upstream 877964 944597 ~ 944874 (+) True G164276
TU222597 lncRNA downstream 39691 1876444 ~ 1877085 (+) True G164400
TU222607 lncRNA downstream 66313 1903066 ~ 1906873 (+) True G164404
TU222720 lncRNA downstream 279090 2115843 ~ 2118502 (+) True G164475
TU222725 lncRNA downstream 342349 2179102 ~ 2180592 (+) True G164479
TU222695 lncRNA downstream 356062 2192815 ~ 2193188 (+) True G164467
XM_022680052.1 mRNA upstream 618 1806395 ~ 1822220 (+) True ehhadh
XM_022680049.1 mRNA upstream 26091 1783878 ~ 1796747 (+) False LOC103028997
XM_022680047.1 mRNA upstream 26091 1783880 ~ 1796747 (+) True LOC103028997
XM_007233773.3 mRNA upstream 39797 1775451 ~ 1783041 (+) False LOC103029311
XM_022680053.1 mRNA downstream 33733 1870486 ~ 1878855 (+) True nup35
XM_022679996.1 mRNA downstream 43395 1880148 ~ 1882693 (+) True LOC111194854
XM_007233764.3 mRNA downstream 256596 2093349 ~ 2191914 (+) True znf804a
XM_022680063.1 mRNA downstream 603903 2440656 ~ 2473897 (+) True LOC103024889
XM_022680066.1 mRNA downstream 767305 2604058 ~ 2655714 (+) True kansl1l
TU222476 other upstream 342104 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1250645 538279 ~ 572193 (+) True G164126
TU222840 other downstream 653291 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 4308184 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 4323647 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 4503242 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 4503242 6339995 ~ 6345403 (+) False wdr4

Expression Profile