RNA id: TU222607


Basic Information

Item Value
RNA id TU222607
length 268
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G164404
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1903066 ~ 1906873 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcattcactcactcactcactcactcacttattcactcactcacttattcacacactcacttATTCACTAATTCACTCGCTCAATTAATCACTAATTCACTCAcccacttattcactcactcactcattcactcacccactcattcacttacttacttattcACTCGCTCAATTATTCactaattcactcactcactcattcacccactcactcattcacttactcactcacttattcactcactcatttattcactcactcactca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222597 lncRNA upstream 25981 1876444 ~ 1877085 (+) True G164400
TU222579 lncRNA upstream 64979 1802787 ~ 1838087 (+) True LOC103028062
TU222581 lncRNA upstream 64979 1802787 ~ 1838087 (+) False LOC103028062
TU222569 lncRNA upstream 142512 1759931 ~ 1760554 (+) False tspear
TU222562 lncRNA upstream 194425 1706881 ~ 1708641 (+) True G164376
TU222720 lncRNA downstream 208970 2115843 ~ 2118502 (+) True G164475
TU222725 lncRNA downstream 272229 2179102 ~ 2180592 (+) True G164479
TU222695 lncRNA downstream 285942 2192815 ~ 2193188 (+) True G164467
TU222750 lncRNA downstream 320673 2227546 ~ 2227792 (+) True G164498
TU222753 lncRNA downstream 389660 2296533 ~ 2296987 (+) True G164501
XM_022679996.1 mRNA upstream 20373 1880148 ~ 1882693 (+) True LOC111194854
XM_022680053.1 mRNA upstream 24211 1870486 ~ 1878855 (+) True nup35
XM_022680650.1 mRNA upstream 66313 1822838 ~ 1836753 (+) False LOC103028062
XM_022680052.1 mRNA upstream 80846 1806395 ~ 1822220 (+) True ehhadh
XM_022680049.1 mRNA upstream 106319 1783878 ~ 1796747 (+) False LOC103028997
XM_007233764.3 mRNA downstream 186476 2093349 ~ 2191914 (+) True znf804a
XM_022680063.1 mRNA downstream 533783 2440656 ~ 2473897 (+) True LOC103024889
XM_022680066.1 mRNA downstream 697185 2604058 ~ 2655714 (+) True kansl1l
XM_022680068.1 mRNA downstream 753582 2660455 ~ 2875066 (+) True map2
XM_022680069.1 mRNA downstream 1005134 2912007 ~ 3011890 (+) True cps1
TU222580 other upstream 64979 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 68432 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 422332 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1330873 538279 ~ 572193 (+) True G164126
TU222840 other downstream 583171 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 4238064 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 4253527 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 4433122 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 4433122 6339995 ~ 6345403 (+) False wdr4

Expression Profile