RNA id: TU222695


Basic Information

Item Value
RNA id TU222695
length 374
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G164467
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2192815 ~ 2193188 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacatgtaaacCATTCCCTGTGTTGATTGGTTGGAGAACAAGCGGGCAGTTGGGGTATTTTTGCGCTTCGTCGGCGCTCTGGAGCTTTGCGTGAATTAAAAAAGTGGTCTGAGCCGATGTAATTCCTTCCTTCATTTATTTCCAGTCGATGtctttcctcttttctttccttctttcctccTGAGGAAGATAATAGCCCTATTATCCTCCAGTCGGGAAATCACTTTACGGCCCAAATTGATTGgagcactaataataataataatgaaaatccCAGATTTATTCGGAGACGTTGAGCAGGGAGATTCTGTGGAGTAGCTTCAGTAAAGGTAGGGTAGGTCGTGTTAAATAAAGGATAAaaagaagaatat

Function

GO:

id name namespace
GO:0007610 behavior biological_process
GO:0030537 larval behavior biological_process
GO:0008345 larval locomotory behavior biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222725 lncRNA upstream 12223 2179102 ~ 2180592 (+) True G164479
TU222720 lncRNA upstream 74313 2115843 ~ 2118502 (+) True G164475
TU222607 lncRNA upstream 285942 1903066 ~ 1906873 (+) True G164404
TU222597 lncRNA upstream 315730 1876444 ~ 1877085 (+) True G164400
TU222579 lncRNA upstream 354728 1802787 ~ 1838087 (+) True LOC103028062
TU222750 lncRNA downstream 34358 2227546 ~ 2227792 (+) True G164498
TU222753 lncRNA downstream 103345 2296533 ~ 2296987 (+) True G164501
TU222769 lncRNA downstream 178008 2371196 ~ 2371425 (+) True G164510
TU222757 lncRNA downstream 195440 2388628 ~ 2389777 (+) True G164505
TU222778 lncRNA downstream 205688 2398876 ~ 2402019 (+) True G164516
XM_007233764.3 mRNA upstream 901 2093349 ~ 2191914 (+) True znf804a
XM_022679996.1 mRNA upstream 310122 1880148 ~ 1882693 (+) True LOC111194854
XM_022680053.1 mRNA upstream 313960 1870486 ~ 1878855 (+) True nup35
XM_022680650.1 mRNA upstream 356062 1822838 ~ 1836753 (+) False LOC103028062
XM_022680052.1 mRNA upstream 370595 1806395 ~ 1822220 (+) True ehhadh
XM_022680063.1 mRNA downstream 247468 2440656 ~ 2473897 (+) True LOC103024889
XM_022680066.1 mRNA downstream 410870 2604058 ~ 2655714 (+) True kansl1l
XM_022680068.1 mRNA downstream 467267 2660455 ~ 2875066 (+) True map2
XM_022680069.1 mRNA downstream 718819 2912007 ~ 3011890 (+) True cps1
XM_007253262.3 mRNA downstream 1846798 4039986 ~ 4043593 (+) True LOC103033219
TU222580 other upstream 354728 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 358181 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 712081 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1620622 538279 ~ 572193 (+) True G164126
TU222840 other downstream 296856 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 3951749 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 3967212 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 4146807 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 4146807 6339995 ~ 6345403 (+) False wdr4

Expression Profile