RNA id: TU222725


Basic Information

Item Value
RNA id TU222725
length 1255
lncRNA type intronic
GC content 0.42
exon number 2
gene id G164479
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2179102 ~ 2180592 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAGTAGAGTGTGTTGAACTGCTGGTACAGTACGAGTAgatcagcactgctgtatccgATCCAccccacccaaataataaacGTAGCTGCTTTATGGTGTTTTTTCTATgctgtggggttctgagtattgaagaacaacAGGGTGAAATGAGGAGAATATTAAcagatacagagaaacagacacagaactacagtctgtaactattatagaactacaaaatgattctgtatgatacaatatggagATGCTAAAATGACTTAAATTGACTTTACTTTATTCATCTCCAATATGGAAATTCGTCCATTTGTCCAGCTGCAAACATGTACAAAAGAAAACTGCACAAAAGTGTATATCACAGAACACAAGACAACTACTCATAACACTAATGCCCGGATCAGACTACACGATTTTGACCCGATTTTGACCCGATTTTGTCGGCGCCGACACATTGCGTGTGTCGGATCCGAAGGTCCGTGTAGTGAGACACAGTCAAAGAGCAGTAATGTGACGTGAGCGACGCCGTCGGAACGTCCGATGGAAAGATTAGCATGTtggaattttttgtattttatcgcctagtttgacaCATGCTGCTCCGCGACCTgctccctgactctgaccaataggaagacagagcaTTCTGTGGCGCACAGATTTAAACACGGAAAAAGAAAGCAGGACGGTGCTCCTGCAGTTcactggaccagagaaacaataatctaataatcatctaataatctacttcatccattaaatattctgtttacaggtactgaaacctaagtagctacatctttaccataccttaagttctctctggagtacacgaagcatgtaatgtccatttgggtcacccaggaacCCAGGAATGAGCCCACAGTcgcttttccctctttttttagtttttttcagcaCAAAAGCGCTACCATCACACAAAGGGCTTCTTTAGCCATGATTGTCAGATTCTATGCTTCTCCCCCGcgatgacctacgaactcacGCGAGGACGCGGacgatgattggtcggtgactaacctgtagtgttgccagtcctCAGAGAACGACGCAAAACGAAAAtgactgcttaatctgacatagtgaacattgtgagggacaaaaatgtggtgtagtctgagcttggcattaaACACATAGTAATAACGGAGTACACAGTCAATAGCCGATGCTATACAGTCCTATAGAATTAACAGTGAGCATAGAACCAATAGgtattcataatgttttgacTGTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222720 lncRNA upstream 60600 2115843 ~ 2118502 (+) True G164475
TU222607 lncRNA upstream 272229 1903066 ~ 1906873 (+) True G164404
TU222597 lncRNA upstream 302017 1876444 ~ 1877085 (+) True G164400
TU222579 lncRNA upstream 341015 1802787 ~ 1838087 (+) True LOC103028062
TU222581 lncRNA upstream 341015 1802787 ~ 1838087 (+) False LOC103028062
TU222695 lncRNA downstream 12223 2192815 ~ 2193188 (+) True G164467
TU222750 lncRNA downstream 46954 2227546 ~ 2227792 (+) True G164498
TU222753 lncRNA downstream 115941 2296533 ~ 2296987 (+) True G164501
TU222769 lncRNA downstream 190604 2371196 ~ 2371425 (+) True G164510
TU222757 lncRNA downstream 208036 2388628 ~ 2389777 (+) True G164505
XM_022679996.1 mRNA upstream 296409 1880148 ~ 1882693 (+) True LOC111194854
XM_022680053.1 mRNA upstream 300247 1870486 ~ 1878855 (+) True nup35
XM_022680650.1 mRNA upstream 342349 1822838 ~ 1836753 (+) False LOC103028062
XM_022680052.1 mRNA upstream 356882 1806395 ~ 1822220 (+) True ehhadh
XM_022680047.1 mRNA upstream 382355 1783880 ~ 1796747 (+) True LOC103028997
XM_022680063.1 mRNA downstream 260064 2440656 ~ 2473897 (+) True LOC103024889
XM_022680066.1 mRNA downstream 423466 2604058 ~ 2655714 (+) True kansl1l
XM_022680068.1 mRNA downstream 479863 2660455 ~ 2875066 (+) True map2
XM_022680069.1 mRNA downstream 731415 2912007 ~ 3011890 (+) True cps1
XM_007253262.3 mRNA downstream 1859394 4039986 ~ 4043593 (+) True LOC103033219
TU222580 other upstream 341015 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 344468 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 698368 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1606909 538279 ~ 572193 (+) True G164126
TU222840 other downstream 309452 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 3964345 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 3979808 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 4159403 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 4159403 6339995 ~ 6345403 (+) False wdr4

Expression Profile