RNA id: TU222750


Basic Information

Item Value
RNA id TU222750
length 247
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G164498
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2227546 ~ 2227792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAGTGGAGTTATGtgtcataactaagttttgggagtgagccacgccctcactcctcccacttccatccctatttaaacagtcacttcctctctacctactcattgaacaaacctcgcacccacctcctccccatcttcctccttctttaattttattctcttctcatgtttctcttcatgagagggggggcttcggcttcacgctttacagcgaagctgccccgaactccatcccaaatactctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222695 lncRNA upstream 34358 2192815 ~ 2193188 (+) True G164467
TU222725 lncRNA upstream 46954 2179102 ~ 2180592 (+) True G164479
TU222720 lncRNA upstream 109044 2115843 ~ 2118502 (+) True G164475
TU222607 lncRNA upstream 320673 1903066 ~ 1906873 (+) True G164404
TU222597 lncRNA upstream 350461 1876444 ~ 1877085 (+) True G164400
TU222753 lncRNA downstream 68741 2296533 ~ 2296987 (+) True G164501
TU222769 lncRNA downstream 143404 2371196 ~ 2371425 (+) True G164510
TU222757 lncRNA downstream 160836 2388628 ~ 2389777 (+) True G164505
TU222778 lncRNA downstream 171084 2398876 ~ 2402019 (+) True G164516
TU222779 lncRNA downstream 171084 2398876 ~ 2402019 (+) False G164516
XM_007233764.3 mRNA upstream 35632 2093349 ~ 2191914 (+) True znf804a
XM_022679996.1 mRNA upstream 344853 1880148 ~ 1882693 (+) True LOC111194854
XM_022680053.1 mRNA upstream 348691 1870486 ~ 1878855 (+) True nup35
XM_022680650.1 mRNA upstream 390793 1822838 ~ 1836753 (+) False LOC103028062
XM_022680052.1 mRNA upstream 405326 1806395 ~ 1822220 (+) True ehhadh
XM_022680063.1 mRNA downstream 212864 2440656 ~ 2473897 (+) True LOC103024889
XM_022680066.1 mRNA downstream 376266 2604058 ~ 2655714 (+) True kansl1l
XM_022680068.1 mRNA downstream 432663 2660455 ~ 2875066 (+) True map2
XM_022680069.1 mRNA downstream 684215 2912007 ~ 3011890 (+) True cps1
XM_007253262.3 mRNA downstream 1812194 4039986 ~ 4043593 (+) True LOC103033219
TU222580 other upstream 389459 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 392912 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 746812 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1655353 538279 ~ 572193 (+) True G164126
TU222840 other downstream 262252 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 3917145 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 3932608 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 4112203 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 4112203 6339995 ~ 6345403 (+) False wdr4

Expression Profile