RNA id: TU222769


Basic Information

Item Value
RNA id TU222769
length 230
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G164510
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2371196 ~ 2371425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaaaaaacagcaaaagcaaaccgcctgaccttttttcacctcctcgacctgagcatgaacttcagaccagctgtttactgtttctccactccagcaaaagatgctccacatatgagctgctaactttaacgcatccatttccctttataaagctacgagtctctcgtctctctaatatgagttttttttttttttttttgtacaggtatcaatgtgagCATGTAAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222753 lncRNA upstream 74209 2296533 ~ 2296987 (+) True G164501
TU222750 lncRNA upstream 143404 2227546 ~ 2227792 (+) True G164498
TU222695 lncRNA upstream 178008 2192815 ~ 2193188 (+) True G164467
TU222725 lncRNA upstream 190604 2179102 ~ 2180592 (+) True G164479
TU222720 lncRNA upstream 252694 2115843 ~ 2118502 (+) True G164475
TU222757 lncRNA downstream 17203 2388628 ~ 2389777 (+) True G164505
TU222778 lncRNA downstream 27451 2398876 ~ 2402019 (+) True G164516
TU222779 lncRNA downstream 27451 2398876 ~ 2402019 (+) False G164516
TU222780 lncRNA downstream 27451 2398876 ~ 2402019 (+) False G164516
TU222781 lncRNA downstream 27451 2398876 ~ 2402019 (+) False G164516
XM_007233764.3 mRNA upstream 179282 2093349 ~ 2191914 (+) True znf804a
XM_022679996.1 mRNA upstream 488503 1880148 ~ 1882693 (+) True LOC111194854
XM_022680053.1 mRNA upstream 492341 1870486 ~ 1878855 (+) True nup35
XM_022680650.1 mRNA upstream 534443 1822838 ~ 1836753 (+) False LOC103028062
XM_022680052.1 mRNA upstream 548976 1806395 ~ 1822220 (+) True ehhadh
XM_022680063.1 mRNA downstream 69231 2440656 ~ 2473897 (+) True LOC103024889
XM_022680066.1 mRNA downstream 232633 2604058 ~ 2655714 (+) True kansl1l
XM_022680068.1 mRNA downstream 289030 2660455 ~ 2875066 (+) True map2
XM_022680069.1 mRNA downstream 540582 2912007 ~ 3011890 (+) True cps1
XM_007253262.3 mRNA downstream 1668561 4039986 ~ 4043593 (+) True LOC103033219
TU222580 other upstream 533109 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 536562 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 890462 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1799003 538279 ~ 572193 (+) True G164126
TU222840 other downstream 118619 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 3773512 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 3788975 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 3968570 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 3968570 6339995 ~ 6345403 (+) False wdr4

Expression Profile