RNA id: TU222779


Basic Information

Item Value
RNA id TU222779
length 1880
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G164516
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2398876 ~ 2402019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attttttttgtctcttttgaatttgcaacctACAATTTTCCTTTcgattcttacattttttaatttatttgtgtacttttggcacaaaaaatttactccagaaaaaaaaaaaaaaaaaaacatgctactGCTGCTACTCACCGCTGGCAGaggcttcttcttctttgcaCAATTGATGCCCCCAATCGTCACCATGTTGGGCATTATGGGTCTCGGGTACTCAAAAACGAAGTCATACCTCATTAGCCAAATCGCACCGTGACTGAGAACCTCTTTGAAGCTGGTGTCCCTCTGAAGATATTTGCTGACCAGTTTATCAGAACTGTCATAAATATACCAGCATAGGATCGACTCAAATCCCATCATTAAGATGTTCTTCACCCTCTGAGGGAAGGTCATAACGTCACTGTTCCTCGACAAAAAGCGAGGGACGTAGGAAGGTAGTGAGAGGCACTGGGCTGCTAATTGCTCCAGACCGCAGGGCATCGCACGCAGGAGGAAGACGACGGGAATCGAGAATGCCTCAGCAATGATGGGACCACAGGGCTGGACTGGGTCGGTCAGCATGAGGTCAAAACCTCGTTCCTTCAGGCTCTTCATCACAGGTTCATCATATAGCAGCTTCTCACAGCCTCTCAGTTGCATCTCGTTGAAGCTCAGAAGCCGGTCGATGCCCTCAAAGATGTTGGAAAGCTTCTTCGTCATCCTGTGCTTAAACCTGTCGATGTGGGCGTCCATTTGGGCCTGGCTGTAGGGCACTTTAAAGGTCTGGGTGGTGTACTTGCCTGTACTGTGTAATAGAAGGCCTACGTCAGGAACCAAAACCAGCATCTCGTGGCCTTTCTGAGACAACTCCTCCACCAGGATCTTCATACTGAGCCAGTGGCTGCCGTCCACAGGCATGACCAGTACCTTCCCACCTTCCACAGATCTTATAGAAGAGCAGGCAAGACCCAGCAAGActgtaaaagctgtaaaacTCTGCAGTTTTCCCATGTTCCTCCCAGAAACAAGCTTTTATAGGTGAAGAACTGCAGGAGGAACACTGCCACAGCGCTGCAACAGTTCCACAGTGCAGAGCTctttcagagaaactgaagcagCCCACAGTTACTGCACTATAATACTCCAGTCTCCAGGGAGTGGTGTAATGATACAAAGTTCACTATATAAAGCAGGCACaagattttaaccctttcagccGATTCTATTCtcacatacagtaccaatcTAAAGTTTGGACTCACTCTGTTATTCAAAATgttgctttatttctttatttaatttattttctactatTTTCTGTAGattcatattaaagacattaaaacaattaagggacacacatggaattatgtagtaaacagtgaTGAACCAGTATCTTCCCACCTTACACAGTTCACTATATAAAGCAGGCACaagattttaaccctttcagccGATTCTATTCTCATATACAGCACCAATCTCAAGTTTGGACTCCAACCCTTCTcaatcaatgtttttctttatctctttatttaatttattttctactattttctgtagattaatattaaagacgtgaaaacaattaagggacacacatggaattatgtagCAAAAAGtaatgaactgagatggtgatttgaggtgatttatttgggatgagctggagcttcacagcatgaatgaTGATCcggaacgcagcagcacgtctggtcttcaaccagccaaaacgggcacatgtcaccccgctgctcattgagctccattggctaccagttgatgctcgcatcaaattcaaagctcttactatcgcctacaaggtgatgacagaacaggctccttcctacctgcactcgctcctgaaggcttacgctacctcccggctgctgcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222757 lncRNA upstream 9099 2388628 ~ 2389777 (+) True G164505
TU222769 lncRNA upstream 27451 2371196 ~ 2371425 (+) True G164510
TU222753 lncRNA upstream 101889 2296533 ~ 2296987 (+) True G164501
TU222750 lncRNA upstream 171084 2227546 ~ 2227792 (+) True G164498
TU222695 lncRNA upstream 205688 2192815 ~ 2193188 (+) True G164467
TU222787 lncRNA downstream 515 2402534 ~ 2407552 (+) False G164518
TU222788 lncRNA downstream 515 2402534 ~ 2407552 (+) False G164518
TU222789 lncRNA downstream 515 2402534 ~ 2407552 (+) True G164518
TU222834 lncRNA downstream 81544 2483563 ~ 2487195 (+) True G164537
TU222842 lncRNA downstream 94578 2496597 ~ 2501144 (+) True G164540
XM_007233764.3 mRNA upstream 206962 2093349 ~ 2191914 (+) True znf804a
XM_022679996.1 mRNA upstream 516183 1880148 ~ 1882693 (+) True LOC111194854
XM_022680053.1 mRNA upstream 520021 1870486 ~ 1878855 (+) True nup35
XM_022680650.1 mRNA upstream 562123 1822838 ~ 1836753 (+) False LOC103028062
XM_022680052.1 mRNA upstream 576656 1806395 ~ 1822220 (+) True ehhadh
XM_022680063.1 mRNA downstream 38637 2440656 ~ 2473897 (+) True LOC103024889
XM_022680066.1 mRNA downstream 202039 2604058 ~ 2655714 (+) True kansl1l
XM_022680068.1 mRNA downstream 258436 2660455 ~ 2875066 (+) True map2
XM_022680069.1 mRNA downstream 509988 2912007 ~ 3011890 (+) True cps1
XM_007253262.3 mRNA downstream 1637967 4039986 ~ 4043593 (+) True LOC103033219
TU222580 other upstream 560789 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 564242 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 918142 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1826683 538279 ~ 572193 (+) True G164126
TU222840 other downstream 88025 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 3742918 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 3758381 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 3937976 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 3937976 6339995 ~ 6345403 (+) False wdr4