RNA id: TU222788


Basic Information

Item Value
RNA id TU222788
length 1525
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G164518
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2402534 ~ 2407552 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttaaagataaatgtgctaattAGTACaagaatttaaagtataaaccatattctggtttgtttgacaTTAATTATTCCAAACAATTACACATGTGTTCATGTAAAgctttaaaatactgtagtcttcaatataaaatgtacagtgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaataaaataggaCCAAGGATTGACCCTTGTGGATCTCCACATGGAAAGTCAGCACAAGAAGACATCTTTCCTCCAACAGATACCCTGAAACTTCTATTGATTAAATATGAAGCACATGCtgagactgaaaacatttatcAAAATCCATTACAAAGCTAATGTTGAAGAACGGTTCCATGAGCTGTTCGGTTTTTTAGAAAGGTTCTAAGAGATGTTTGGTGTAGCATCACAGTGAATAATCAATGTGTAAAATATGATGCTGTCCAATGGACCCTCCAAACACCTCCACTCAACTGGAATTGAGTGACTGaatcaaacaaaagaaaatagtCAAAAACTGATACTATTTAGTGCTACTCACCGCTGGCAGAGACTTCTTCTTTGCACAATTGATGCCGCCGATTGTCACCATGTTGGGCATCATGGGTCTCGGGTAATCGAAAGTGAAATCATACCTCATTAGCCAAATCGCACTGTGACTAAGAAGCTCTTTATAGGTAGTGTCTCTCTGAAGGTATCTACTGGACAGTTCATCAGAGCTGCTGTAAAGCGTTTTGCACATGAGCGGCTCAAGTCCCGTCATGACCATGTTCTTGACCCTCTGAGGAAAGTTCATGACGTCCGAGTTGCCCGTTAATAATCGTGGGATGTAGGAAGGTGGTGAGGGGCACTGGGCTGCAGCCATGTCCAAGCCACAAGGTATTCCGCGAAGGAAATTAACAGTAGGGATTGAGAACGCCTCAGCAATGATCAGACCACAGGGCAGGAACGGGTCGGTCAGCATGAGGTCGAAACTTCGTTCTTTCAGGCTCTTCGTCAGAGGTTTATCGTAGAGCAGAGTTTCACAGCCCTTCACCTGCATCTCATTGAAGTTTATAAGCATCTTTATATTTTCCCATGCATCAGTAATGTTGGAGGCTTCATTATTCCAGCTTTAAAGTCATCCATTATAGCATCCAGATCTGCCTTAGTGTAGGGCACCCTAAAGGTCTGGGTGATGTAGCTGCCATTGCCGATATGAAAGCTAGTGTCAGGAACTAAAACCACCATCTCGTGGCCTTTCCGAtgcatctcctccaccaggATCTTCATGCTGAGCCAGTGGCTGCCGTCCACAGGCATGACCAGTACCTTCCCACCTTCCACAGATCTTATAGAAGAGAAAGCAAGACCCAGCAAGACCAGCAGCCCCAGAGATGCTGTAAAACTCTGCATCCTTCCCATGTTCATCTCAGAAACGAGTCTTTATATGTAAAGAACCGCAAGAAGAAACACTGCCACAGCTCAACAGCTCCACAGTCTACAGCAATTCCTTATATAACCCTGAGTATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222778 lncRNA upstream 515 2398876 ~ 2402019 (+) True G164516
TU222779 lncRNA upstream 515 2398876 ~ 2402019 (+) False G164516
TU222780 lncRNA upstream 515 2398876 ~ 2402019 (+) False G164516
TU222781 lncRNA upstream 515 2398876 ~ 2402019 (+) False G164516
TU222757 lncRNA upstream 12757 2388628 ~ 2389777 (+) True G164505
TU222834 lncRNA downstream 76011 2483563 ~ 2487195 (+) True G164537
TU222842 lncRNA downstream 89045 2496597 ~ 2501144 (+) True G164540
TU222899 lncRNA downstream 249570 2657122 ~ 2732983 (+) True G164590
TU222934 lncRNA downstream 285041 2692593 ~ 2693184 (+) True G164610
TU222957 lncRNA downstream 363794 2771346 ~ 2771853 (+) True G164633
XM_007233764.3 mRNA upstream 210620 2093349 ~ 2191914 (+) True znf804a
XM_022679996.1 mRNA upstream 519841 1880148 ~ 1882693 (+) True LOC111194854
XM_022680053.1 mRNA upstream 523679 1870486 ~ 1878855 (+) True nup35
XM_022680650.1 mRNA upstream 565781 1822838 ~ 1836753 (+) False LOC103028062
XM_022680052.1 mRNA upstream 580314 1806395 ~ 1822220 (+) True ehhadh
XM_022680063.1 mRNA downstream 33104 2440656 ~ 2473897 (+) True LOC103024889
XM_022680066.1 mRNA downstream 196506 2604058 ~ 2655714 (+) True kansl1l
XM_022680068.1 mRNA downstream 252903 2660455 ~ 2875066 (+) True map2
XM_022680069.1 mRNA downstream 504455 2912007 ~ 3011890 (+) True cps1
XM_007253262.3 mRNA downstream 1632434 4039986 ~ 4043593 (+) True LOC103033219
TU222580 other upstream 564447 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 567900 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 921800 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1830341 538279 ~ 572193 (+) True G164126
TU222840 other downstream 82492 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 3737385 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 3752848 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 3932443 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 3932443 6339995 ~ 6345403 (+) False wdr4

Expression Profile