RNA id: TU222840


Basic Information

Item Value
RNA id TU222840
length 529
RNA type TUCP
GC content 0.52
exon number 5
gene id G164539
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2490044 ~ 2492991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTGCAGCCCAGCTGTCGGAGGACGCTGCACCTGTTGATGAAATCGATGGCCTGAGCTTTGAGCTGCTCGGCTCCATGCAGGTCTGCGAGGATGAGCGTGTCAGCGACGTTCTCTACTGATAGACCGTTGCACAGAGCTTCCTCACACATGACCTTTAACCTCTCTAGAGCATATTTATCAGCTGCTGCCAATAAACTGTCAGCCATGTTCTCCAGGTTTGGTGCCTTCCCTGTGTATATAAAACCCATCATCTCTTTGAAGACGTCTGCGTCGATGTCACTGATGTCTACCCGGTTCTTTTTACTTTCCTCCATTTCATGCTCGAACATGGCATTAAAGACCGGCGATCTCGCTGCCAGGATGGATTTGTGGGCCTTGAACTCCTGGCCTCCCACGAACAGTGAGCAGTCTGTAAACCGAGAACACTCCCACAGGTTCCCCAGGTCATCCGACAGCTGGCACTCAGGAACCTTCAGCATGTTCATGTTGGACTGGCCTGAGATATTCACTGAATCCTGCACCACGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222834 lncRNA upstream 2849 2483563 ~ 2487195 (+) True G164537
TU222787 lncRNA upstream 82492 2402534 ~ 2407552 (+) False G164518
TU222788 lncRNA upstream 82492 2402534 ~ 2407552 (+) False G164518
TU222789 lncRNA upstream 82492 2402534 ~ 2407552 (+) True G164518
TU222778 lncRNA upstream 88025 2398876 ~ 2402019 (+) True G164516
TU222842 lncRNA downstream 3606 2496597 ~ 2501144 (+) True G164540
TU222899 lncRNA downstream 164131 2657122 ~ 2732983 (+) True G164590
TU222934 lncRNA downstream 199602 2692593 ~ 2693184 (+) True G164610
TU222957 lncRNA downstream 278355 2771346 ~ 2771853 (+) True G164633
TU222959 lncRNA downstream 288674 2781665 ~ 2783595 (+) True G164635
XM_022680063.1 mRNA upstream 16147 2440656 ~ 2473897 (+) True LOC103024889
XM_007233764.3 mRNA upstream 298130 2093349 ~ 2191914 (+) True znf804a
XM_022679996.1 mRNA upstream 607351 1880148 ~ 1882693 (+) True LOC111194854
XM_022680053.1 mRNA upstream 611189 1870486 ~ 1878855 (+) True nup35
XM_022680650.1 mRNA upstream 653291 1822838 ~ 1836753 (+) False LOC103028062
XM_022680066.1 mRNA downstream 111067 2604058 ~ 2655714 (+) True kansl1l
XM_022680068.1 mRNA downstream 167464 2660455 ~ 2875066 (+) True map2
XM_022680069.1 mRNA downstream 419016 2912007 ~ 3011890 (+) True cps1
XM_007253262.3 mRNA downstream 1546995 4039986 ~ 4043593 (+) True LOC103033219
XM_007253249.3 mRNA downstream 1886031 4379022 ~ 4448620 (+) True vwc2l
TU222580 other upstream 651957 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 655410 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 1009310 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1917851 538279 ~ 572193 (+) True G164126
TU223959 other downstream 3651946 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 3667409 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 3847004 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 3847004 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 4892142 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile