RNA id: TU222842


Basic Information

Item Value
RNA id TU222842
length 498
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id G164540
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2496597 ~ 2501144 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCACAGAACAGAGTCAGTTTATCATCAGGAAGCAGCCCGTTCGCTTCATCCAGCAGAAAATCTCTTCTAATAAACTTCTTGAAGCCCCAGTCTTTGCCTTGGACGAACCGGTAGGCTCTTTGGCTTTCCATAGCTTTAGTCTCCTCACGCTTAGCGTTCAGTAAAGAAAACTTGAACTTGGCTCGGACTTCACTTTTTGGACAGCTAACCAGCAGCAAATACAGTGACAGGTAATCCTTACTTTCATCATCTAGTCCCTTTGGATTGACTCTCAGACACCATTTCATCTTATCGTTGGGACCTGAACAGAAAGATGAGCTTTTCAGAACTTCCCCCATCTCCTCTCGACAGAAGCTGAAGTTGTTGATGGTCCACATATAGGAAAACTTCACTACTTTCACCTGGGTGTAGCACCAGCTCTCAGCCACCGGGCCGCTGCCCATCTCCACCGGGGGAGGAGGGGTGGGGACTCCCGACATGGCCAGCTCAGTCCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222834 lncRNA upstream 9402 2483563 ~ 2487195 (+) True G164537
TU222787 lncRNA upstream 89045 2402534 ~ 2407552 (+) False G164518
TU222788 lncRNA upstream 89045 2402534 ~ 2407552 (+) False G164518
TU222789 lncRNA upstream 89045 2402534 ~ 2407552 (+) True G164518
TU222780 lncRNA upstream 94578 2398876 ~ 2402019 (+) False G164516
TU222899 lncRNA downstream 155978 2657122 ~ 2732983 (+) True G164590
TU222934 lncRNA downstream 191449 2692593 ~ 2693184 (+) True G164610
TU222957 lncRNA downstream 270202 2771346 ~ 2771853 (+) True G164633
TU222959 lncRNA downstream 280521 2781665 ~ 2783595 (+) True G164635
TU222962 lncRNA downstream 316880 2818024 ~ 2915105 (+) True G164638
XM_022680063.1 mRNA upstream 22700 2440656 ~ 2473897 (+) True LOC103024889
XM_007233764.3 mRNA upstream 304683 2093349 ~ 2191914 (+) True znf804a
XM_022679996.1 mRNA upstream 613904 1880148 ~ 1882693 (+) True LOC111194854
XM_022680053.1 mRNA upstream 617742 1870486 ~ 1878855 (+) True nup35
XM_022680650.1 mRNA upstream 659844 1822838 ~ 1836753 (+) False LOC103028062
XM_022680066.1 mRNA downstream 102914 2604058 ~ 2655714 (+) True kansl1l
XM_022680068.1 mRNA downstream 159311 2660455 ~ 2875066 (+) True map2
XM_022680069.1 mRNA downstream 410863 2912007 ~ 3011890 (+) True cps1
XM_007253262.3 mRNA downstream 1538842 4039986 ~ 4043593 (+) True LOC103033219
XM_007253249.3 mRNA downstream 1877878 4379022 ~ 4448620 (+) True vwc2l
TU222840 other upstream 3606 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 658510 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 661963 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 1015863 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1924404 538279 ~ 572193 (+) True G164126
TU223959 other downstream 3643793 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 3659256 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 3838851 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 3838851 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 4883989 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile