RNA id: TU222964


Basic Information

Item Value
RNA id TU222964
length 318
lncRNA type intronic
GC content 0.35
exon number 2
gene id G164640
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2836766 ~ 2840678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaacagagagagagagaaagaaagagatagagagagacatggagagaaaTAAGTGAAaggacaaaagaaaagaaaagaaccaATAGAGTGAAAAATCCACTCACATCAGAAATtaagagaaagaatgaggagagaatgagaaaaagttatgaaggagagagggagaaagagagagacagaaagagagtgaaagggatggagagcaagaaaaagagaaataaaaagaggaaaatgagagagaagagacataGAGAcatgaaaagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222959 lncRNA upstream 53171 2781665 ~ 2783595 (+) True G164635
TU222957 lncRNA upstream 64913 2771346 ~ 2771853 (+) True G164633
TU222899 lncRNA upstream 103783 2657122 ~ 2732983 (+) True G164590
TU222934 lncRNA upstream 143582 2692593 ~ 2693184 (+) True G164610
TU222842 lncRNA upstream 335622 2496597 ~ 2501144 (+) True G164540
TU222966 lncRNA downstream 17940 2858618 ~ 2859368 (+) True G164642
TU222980 lncRNA downstream 171491 3012169 ~ 3013616 (+) True G164652
TU222983 lncRNA downstream 171565 3012243 ~ 3013616 (+) False G164652
TU222984 lncRNA downstream 172351 3013029 ~ 3013616 (+) False G164652
TU223037 lncRNA downstream 241738 3082416 ~ 3082950 (+) True G164699
XM_022680066.1 mRNA upstream 181052 2604058 ~ 2655714 (+) True kansl1l
XM_022680063.1 mRNA upstream 362869 2440656 ~ 2473897 (+) True LOC103024889
XM_007233764.3 mRNA upstream 644852 2093349 ~ 2191914 (+) True znf804a
XM_022679996.1 mRNA upstream 954073 1880148 ~ 1882693 (+) True LOC111194854
XM_022680053.1 mRNA upstream 957911 1870486 ~ 1878855 (+) True nup35
XM_022680069.1 mRNA downstream 71329 2912007 ~ 3011890 (+) True cps1
XM_007253262.3 mRNA downstream 1199308 4039986 ~ 4043593 (+) True LOC103033219
XM_007253249.3 mRNA downstream 1538344 4379022 ~ 4448620 (+) True vwc2l
XM_022680077.1 mRNA downstream 1830454 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA downstream 1830469 4671147 ~ 4734221 (+) True hibch
TU222840 other upstream 343775 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 998679 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 1002132 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 1356032 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 2264573 538279 ~ 572193 (+) True G164126
TU223959 other downstream 3304259 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 3319722 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 3499317 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 3499317 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 4544455 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile