RNA id: TU222983


Basic Information

Item Value
RNA id TU222983
length 1374
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G164652
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 3012169 ~ 3013616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccatgtaccaaatagtgattccacattcgtTTATACTGGTAAACCTCAGATCTCATCTtagatgcttatcttacttttCCATCTTTTCTATCAGTCAGCTTtaactttttattcatttaactatattaacatgttaaatgactaaactggcTTTCTTACTTACTAGATATGTTTAGAAAAGTCATTGTCACAGTTGTTCAgtctatgtatgtgtttattaagtgcttattttttaaagtgttttttaagtatttgcaaGTTAATTCAtaagcattaataaactcatttataatctatctataaaccctttataaagaagccttattttaaagtggtgcccTAATGTTTTTGAGGCTTAACTCAACATGAGTTGATGTAGAAGTTAAAAAATGTGAGTTGAGCCCTATCTGGAAAAGAttaatttctcagggggtcctaatgtattttttttcttttatgggggtccgcttttattttatttctgtccggaacgaccatgtacgtgtttttctaagacctcctctgagaaaattacaggctgaattatctactatagctatttgtccactgccgcacacTGTAATTACGCTTTGCgtgatgtaaaaaaacagaacagcgagtggaaatggaggagctactgaacacgttgtcatgtgaccgagaaagacaaaaaactcAATGGTCctcgtgttttttttatttttttttattgcagttcagatgcaagagttttatcactgagtaaaagtgtgaaatatttttcacagatgtacaagcaaaggtaaaaaaaaaaaaagcacaagccTAACTAAAACATCTGAGCCAAAATATAGTCTAAACAGGTTAAACAGGAGACAAAAAAATAAGGGTGaaaaattgcaaaacaaaatcagactaaaaaaggcaaaaatagaCAAGCGAAGAACATACAGCTCAGCATGTAGCTGAATCACCAGGGGGTAATATCGGCATTTATGCATGGGTAAACAGCTGAAAAGAATCAAAACTCAGGTGAGGCTGATTCTGGCTGGCTTAGATTCATGACCGAGAAGTGCATTCTGGTATTTAGAGTTCATGAAGGTGGAAAAGTGGCCAGTTCTCTTCAGCCCTCTAAACCCACGTCAGATCCACCCATACCTTATAGTGCTAAATATGACATGATATAAGGATATAAGATGGCACGGACTACAAAATGACAAACTACAGAACTTCAGTGGTCTATCAGTATGGTATCTACGGTATGTTACCATGGAGATACAGAGTGAAGTGTGTGTAATGCCTGTGTGTGCTCGTGTGATTGGATATGTCTTTAAACTGTGAGGCGGAGGAAGACTTTTTGGGAAATCTCAATAAACACCTATGTGTCATCCGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222962 lncRNA upstream 97138 2818024 ~ 2915105 (+) True G164638
TU222966 lncRNA upstream 152875 2858618 ~ 2859368 (+) True G164642
TU222964 lncRNA upstream 171565 2836766 ~ 2840678 (+) True G164640
TU222959 lncRNA upstream 228648 2781665 ~ 2783595 (+) True G164635
TU222957 lncRNA upstream 240390 2771346 ~ 2771853 (+) True G164633
TU223037 lncRNA downstream 68800 3082416 ~ 3082950 (+) True G164699
XR_002651317.1 lncRNA downstream 601773 3615389 ~ 3617690 (+) True LOC111194872
TU223057 lncRNA downstream 636759 3650375 ~ 3680035 (+) True G164718
TU223065 lncRNA downstream 786720 3800336 ~ 3802599 (+) True G164725
TU223197 lncRNA downstream 953880 3967496 ~ 4010020 (+) True G164845
XM_022680069.1 mRNA upstream 353 2912007 ~ 3011890 (+) True cps1
XM_022680068.1 mRNA upstream 137177 2660455 ~ 2875066 (+) True map2
XM_022680066.1 mRNA upstream 356529 2604058 ~ 2655714 (+) True kansl1l
XM_022680063.1 mRNA upstream 538346 2440656 ~ 2473897 (+) True LOC103024889
XM_007233764.3 mRNA upstream 820329 2093349 ~ 2191914 (+) True znf804a
XM_007253262.3 mRNA downstream 1026370 4039986 ~ 4043593 (+) True LOC103033219
XM_007253249.3 mRNA downstream 1365406 4379022 ~ 4448620 (+) True vwc2l
XM_022680077.1 mRNA downstream 1657516 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA downstream 1657531 4671147 ~ 4734221 (+) True hibch
XM_007253246.3 mRNA downstream 1743128 4756744 ~ 4760314 (+) True mstn
TU222840 other upstream 519252 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 1174156 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 1177609 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 1531509 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 2440050 538279 ~ 572193 (+) True G164126
TU223959 other downstream 3131321 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 3146784 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 3326379 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 3326379 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 4371517 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile