RNA id: TU223065


Basic Information

Item Value
RNA id TU223065
length 2190
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G164725
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 3800336 ~ 3802599 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatatatatatatataatacccCCTTAAACTCCAGACTTGCACTGCAAACTTGTTATGTTACGTGAGCTGGTTTGACTGTAGttactaaaaaagaaaattcataGTAGTCGCTGGATAATtataatgatgatgaagatCATGAAgttgtaacaataaaaaaaaagaggggaaGTCCCCAGATTTCTCTATAAACCTGTGCATAATTTAGGGGTTGAGATGTAGATAAAGTCAAACTGCAGAGTGGAGTGAAACGGTTCGCTGTGGAGAAACTGTTAGCggcttatttgatttttttttttttttttaatgtggtgATGATGGGGAAAGAATTTCAGGGGTCACAGTAGCAGGTTTTCCATCCACTAAGTTTCTGTgcatttctacaaataaatatatatatatatatatttttttgcaatatattgcaaattaatattttttgcaatgttACATAATGATGATGCATCAAGTCATAAGCACCTGTGGAGcgttatttcattaattttattcttattgcTTGACATATGTTTAAGACAAATGTTTTCCCTCTACTCTGTACTCCCTATACTGTCCTATACTCCAATCTTTACTTCATATCTCACCCTACACTACTGCATTTGCTCTAAACtgccctaaacttaacctttaCTATGCTATACTcactgtactaccctatactatcataGAGTGAATTCTCCATACTCTCTACACTGCCCTATACTATCCTGTTTtacatattctctctctttactaCTATAcgctatttaatatttaatatactctATAATATTTTTCTGTCCTAACTttatatactatcctatatcCCCTATACTGCCTTATACTATGTTTTACTCAATATGACATGTGTCTCCTGAGTTTAATATGCAACGTTAACGTTGCAATAtgaaatttcctttttttaatctttgcAGCCTATTTTGCCTTTAAACACCCTGAATGTATCTCTTTGCcttaaacagattttaaaacattacattttgttAGAAAAATATGCCTTAGCCTAATCCAGTGAGATTAGGCATTAGATTGTGATGTAGCTTTAAGCGGTTCCATTAGTtccatccaccaccatgtttaacagtttctAACAAAGCGTAACAATTCAAACCACTCAAAGACTTTGGAGTCCACTCAAAGGTTATGCAGAAAGTTAGAAAAATCTAAGAAATCACCCTTTATGATTCATAACTGAACAATAAGCCTGGATTTTAAGGGGTTCACTGTTGGACCTAAACCTTCATATAATTGCTAAATGCTGCCGACATGACGCTTACAGCTGCCTTCCCTTCCGGCACGTCTCCTGAGACGTTTCCACACCGTTTGCTGACGTCCCAGGGGCACAACCCTGGACCACCACTATCCGCTCGCGGGTGGGCGGGGAGTGTCCGGATCTCCTCTAACGGAAGGTGTGCACTCCGCGGACGATGTGCGAGGAGAACTCGTAGCGATCCTTGCTGCAGTGGCCGCAGATGTTGCACTCCAGCGGGTCCCTGTAACCGTGGCACCCCATGTGGATGGTGTACATGACGTGGTCGAGGAACAGCACTCGGCAGTGCTCGCACTGGAACGCCCTTAGCTCCTGCCCCTCGCGGCCAAAAACGCGGACCCCTCCGTCCCGGCCCACTTGACGTCCAGGATCGGCCCCCCGGGGGTCGTCTCGCGGCGTGAAGTGACCCGGACTGACCCGAACCAACCTGTTGTTGACCAGCTTCTCCTGAGGGCTGCTGCGGGCCGAATCAGCCGAATCCTGGCCGCTGGTGTTGCTGGGGGAGCCTTCACGCACCACCTGGGGGTTCTTGGGCCTCACCAGAGAGATGGCGCCGTTGGTGGGGGGAGGGAACTCCGTGGGTGGGGGTGGCTGGTGCATGGAGAGAGCTTCGCGGCTGCTAGGCCGGTCAAGTCGCGGGCCGATGGGGTACATGGGGTGAAACAGTGGGTTCACCATCGGAACGACCTCGGCCATGGTGAGCGGAGGGTGATGCACCACAGGTCGCATGTTGTCGCCCAGGTAGGTTATAGCGTTACTGAGCGCCTGGTCCATGATATGCGCCTGCATCATCTCAGCCTCCTTCAGGTTCACGTCGTAGTTCATCTCAGGGTAGGAGAAGCGCATCATCTTCTCCCCTTCAAAACACAATGACATGCAGAAATTAGCACAGGAAGCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223057 lncRNA upstream 120301 3650375 ~ 3680035 (+) True G164718
XR_002651317.1 lncRNA upstream 182646 3615389 ~ 3617690 (+) True LOC111194872
TU223037 lncRNA upstream 717386 3082416 ~ 3082950 (+) True G164699
TU222980 lncRNA upstream 786720 3012169 ~ 3013616 (+) True G164652
TU223197 lncRNA downstream 164897 3967496 ~ 4010020 (+) True G164845
TU223196 lncRNA downstream 171348 3973947 ~ 4010020 (+) False G164845
TU223252 lncRNA downstream 487717 4290316 ~ 4290564 (+) True G164888
TU223257 lncRNA downstream 545650 4348249 ~ 4348655 (+) True G164893
TU223267 lncRNA downstream 588783 4391382 ~ 4391679 (+) True G164902
XM_022680069.1 mRNA upstream 788446 2912007 ~ 3011890 (+) True cps1
XM_022680068.1 mRNA upstream 925270 2660455 ~ 2875066 (+) True map2
XM_022680066.1 mRNA upstream 1144622 2604058 ~ 2655714 (+) True kansl1l
XM_022680063.1 mRNA upstream 1326439 2440656 ~ 2473897 (+) True LOC103024889
XM_007233764.3 mRNA upstream 1608422 2093349 ~ 2191914 (+) True znf804a
XM_007253262.3 mRNA downstream 237387 4039986 ~ 4043593 (+) True LOC103033219
XM_007253249.3 mRNA downstream 576423 4379022 ~ 4448620 (+) True vwc2l
XM_022680077.1 mRNA downstream 868533 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA downstream 868548 4671147 ~ 4734221 (+) True hibch
XM_007253246.3 mRNA downstream 954145 4756744 ~ 4760314 (+) True mstn
TU222840 other upstream 1307345 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 1962249 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 1965702 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 2319602 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 3228143 538279 ~ 572193 (+) True G164126
TU223959 other downstream 2342338 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 2357801 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 2537396 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 2537396 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 3582534 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile