RNA id: TU223197


Basic Information

Item Value
RNA id TU223197
length 384
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G164845
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 3967496 ~ 4010020 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagagatgttcgggtgctaacccggattgtattcaaaaaacataaaaccacagctgatcaaatcacggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaatgaaactgaaacacctgtcattttaatgtgggaggtttcatggctaaattggagcagcctggtggccaatcttcattaattgcacattgcaccagtaagagcagagtgtgaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgtttgggtgctaacccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223065 lncRNA upstream 164897 3800336 ~ 3802599 (+) True G164725
TU223057 lncRNA upstream 287461 3650375 ~ 3680035 (+) True G164718
XR_002651317.1 lncRNA upstream 349806 3615389 ~ 3617690 (+) True LOC111194872
TU223037 lncRNA upstream 884546 3082416 ~ 3082950 (+) True G164699
TU222983 lncRNA upstream 953880 3012243 ~ 3013616 (+) False G164652
TU223252 lncRNA downstream 280296 4290316 ~ 4290564 (+) True G164888
TU223257 lncRNA downstream 338229 4348249 ~ 4348655 (+) True G164893
TU223267 lncRNA downstream 381362 4391382 ~ 4391679 (+) True G164902
TU223269 lncRNA downstream 385292 4395312 ~ 4439720 (+) True G164903
TU223270 lncRNA downstream 385292 4395312 ~ 4439720 (+) False G164903
XM_022680069.1 mRNA upstream 955606 2912007 ~ 3011890 (+) True cps1
XM_022680068.1 mRNA upstream 1092430 2660455 ~ 2875066 (+) True map2
XM_022680066.1 mRNA upstream 1311782 2604058 ~ 2655714 (+) True kansl1l
XM_022680063.1 mRNA upstream 1493599 2440656 ~ 2473897 (+) True LOC103024889
XM_007233764.3 mRNA upstream 1775582 2093349 ~ 2191914 (+) True znf804a
XM_007253262.3 mRNA downstream 29966 4039986 ~ 4043593 (+) True LOC103033219
XM_007253249.3 mRNA downstream 369002 4379022 ~ 4448620 (+) True vwc2l
XM_022680077.1 mRNA downstream 661112 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA downstream 661127 4671147 ~ 4734221 (+) True hibch
XM_007253246.3 mRNA downstream 746724 4756744 ~ 4760314 (+) True mstn
TU222840 other upstream 1474505 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 2129409 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 2132862 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 2486762 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 3395303 538279 ~ 572193 (+) True G164126
TU223959 other downstream 2134917 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 2150380 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 2329975 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 2329975 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 3375113 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile