RNA id: TU223252


Basic Information

Item Value
RNA id TU223252
length 249
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G164888
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4290316 ~ 4290564 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTATTCGTATGAAAAATGTGTAAggagtctgtctgtctatacgAGGGGGTCACTGAGTTTGCCTGGAGTGAAGGGGTTCGTTGGAACCTGGGCCAAGAAATGAAAAACACCCCACATCTgtttcctatttttcctttGCCTGAAACATACATATGTCCTTTTATGGTAAAGAAATGTGATATGCATTCGTATAAAAACCCTGTAACACAAAGAGAGGGGGGAGAGAATCTTCAGACACCCAAGAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223197 lncRNA upstream 280296 3967496 ~ 4010020 (+) True G164845
TU223196 lncRNA upstream 280296 3973947 ~ 4010020 (+) False G164845
TU223065 lncRNA upstream 487717 3800336 ~ 3802599 (+) True G164725
TU223057 lncRNA upstream 610281 3650375 ~ 3680035 (+) True G164718
XR_002651317.1 lncRNA upstream 672626 3615389 ~ 3617690 (+) True LOC111194872
TU223257 lncRNA downstream 57685 4348249 ~ 4348655 (+) True G164893
TU223267 lncRNA downstream 100818 4391382 ~ 4391679 (+) True G164902
TU223269 lncRNA downstream 104748 4395312 ~ 4439720 (+) True G164903
TU223270 lncRNA downstream 104748 4395312 ~ 4439720 (+) False G164903
TU223263 lncRNA downstream 159415 4449979 ~ 4491709 (+) True G164899
XM_007253262.3 mRNA upstream 246723 4039986 ~ 4043593 (+) True LOC103033219
XM_022680069.1 mRNA upstream 1278426 2912007 ~ 3011890 (+) True cps1
XM_022680068.1 mRNA upstream 1415250 2660455 ~ 2875066 (+) True map2
XM_022680066.1 mRNA upstream 1634602 2604058 ~ 2655714 (+) True kansl1l
XM_022680063.1 mRNA upstream 1816419 2440656 ~ 2473897 (+) True LOC103024889
XM_007253249.3 mRNA downstream 88458 4379022 ~ 4448620 (+) True vwc2l
XM_022680077.1 mRNA downstream 380568 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA downstream 380583 4671147 ~ 4734221 (+) True hibch
XM_007253246.3 mRNA downstream 466180 4756744 ~ 4760314 (+) True mstn
XM_007253245.3 mRNA downstream 519984 4810548 ~ 4817692 (+) False ormdl1
TU222840 other upstream 1797325 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 2452229 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 2455682 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 2809582 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 3718123 538279 ~ 572193 (+) True G164126
TU223959 other downstream 1854373 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 1869836 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 2049431 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 2049431 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 3094569 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile