RNA id: TU223257


Basic Information

Item Value
RNA id TU223257
length 407
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G164893
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4348249 ~ 4348655 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacaaatttacaagaaggacatggatcagatatattccataagtaaataatagtcctaaggggcctacacaattactaatctttcattaatacttctttctattgttcagtccactcctgatcagttcagttaatttcagccctctccacattttctctctctccagctcaaccatctcttctaccccttctaaataatacattacattacattataatacattaccacaatacttgagatttaaacaaattctaacaaaccctaaaactagccctgaactaatagagtttggaaatgatagttattggctgatcaggcacatcagggcagggcattatatatatatatatgtagatttttctcaaaccctgaatatctatctagctaattctaaagttaagctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223252 lncRNA upstream 57685 4290316 ~ 4290564 (+) True G164888
TU223197 lncRNA upstream 338229 3967496 ~ 4010020 (+) True G164845
TU223196 lncRNA upstream 338229 3973947 ~ 4010020 (+) False G164845
TU223065 lncRNA upstream 545650 3800336 ~ 3802599 (+) True G164725
TU223057 lncRNA upstream 668214 3650375 ~ 3680035 (+) True G164718
TU223267 lncRNA downstream 42727 4391382 ~ 4391679 (+) True G164902
TU223269 lncRNA downstream 46657 4395312 ~ 4439720 (+) True G164903
TU223270 lncRNA downstream 46657 4395312 ~ 4439720 (+) False G164903
TU223263 lncRNA downstream 101324 4449979 ~ 4491709 (+) True G164899
TU223274 lncRNA downstream 103393 4452048 ~ 4454815 (+) True G164907
XM_007253262.3 mRNA upstream 304656 4039986 ~ 4043593 (+) True LOC103033219
XM_022680069.1 mRNA upstream 1336359 2912007 ~ 3011890 (+) True cps1
XM_022680068.1 mRNA upstream 1473183 2660455 ~ 2875066 (+) True map2
XM_022680066.1 mRNA upstream 1692535 2604058 ~ 2655714 (+) True kansl1l
XM_022680063.1 mRNA upstream 1874352 2440656 ~ 2473897 (+) True LOC103024889
XM_007253249.3 mRNA downstream 30367 4379022 ~ 4448620 (+) True vwc2l
XM_022680077.1 mRNA downstream 322477 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA downstream 322492 4671147 ~ 4734221 (+) True hibch
XM_007253246.3 mRNA downstream 408089 4756744 ~ 4760314 (+) True mstn
XM_007253245.3 mRNA downstream 461893 4810548 ~ 4817692 (+) False ormdl1
TU222840 other upstream 1855258 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 2510162 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 2513615 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 2867515 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 3776056 538279 ~ 572193 (+) True G164126
TU223959 other downstream 1796282 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 1811745 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 1991340 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 1991340 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 3036478 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile