RNA id: TU223267


Basic Information

Item Value
RNA id TU223267
length 298
lncRNA type intronic
GC content 0.48
exon number 1
gene id G164902
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4391382 ~ 4391679 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaactgcgcaccctctccgcttttagactctttggtctgtttttctgcgctacaactgagcactctctccgcttttagactctttggtctgtttttctgcgctacaactgagcactctctccgcttttagactctttggtctgtttttctgcgctacaactgagcactctctccgcttttagactctttggtctgtttttctgcgctacaactgcgcactctctccgcttttagactctttggtctgtttttctgcgctacaactgagcactctctccgcttttagactctttggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223257 lncRNA upstream 42727 4348249 ~ 4348655 (+) True G164893
TU223252 lncRNA upstream 100818 4290316 ~ 4290564 (+) True G164888
TU223197 lncRNA upstream 381362 3967496 ~ 4010020 (+) True G164845
TU223196 lncRNA upstream 381362 3973947 ~ 4010020 (+) False G164845
TU223065 lncRNA upstream 588783 3800336 ~ 3802599 (+) True G164725
TU223269 lncRNA downstream 3633 4395312 ~ 4439720 (+) True G164903
TU223270 lncRNA downstream 3633 4395312 ~ 4439720 (+) False G164903
TU223263 lncRNA downstream 58300 4449979 ~ 4491709 (+) True G164899
TU223274 lncRNA downstream 60369 4452048 ~ 4454815 (+) True G164907
TU223278 lncRNA downstream 110269 4501948 ~ 4503411 (+) True G164910
XM_007253262.3 mRNA upstream 347789 4039986 ~ 4043593 (+) True LOC103033219
XM_022680069.1 mRNA upstream 1379492 2912007 ~ 3011890 (+) True cps1
XM_022680068.1 mRNA upstream 1516316 2660455 ~ 2875066 (+) True map2
XM_022680066.1 mRNA upstream 1735668 2604058 ~ 2655714 (+) True kansl1l
XM_022680063.1 mRNA upstream 1917485 2440656 ~ 2473897 (+) True LOC103024889
XM_022680077.1 mRNA downstream 279453 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA downstream 279468 4671147 ~ 4734221 (+) True hibch
XM_007253246.3 mRNA downstream 365065 4756744 ~ 4760314 (+) True mstn
XM_007253245.3 mRNA downstream 418869 4810548 ~ 4817692 (+) False ormdl1
XM_007253244.3 mRNA downstream 421023 4812702 ~ 4817692 (+) True ormdl1
TU222840 other upstream 1898391 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 2553295 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 2556748 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 2910648 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 3819189 538279 ~ 572193 (+) True G164126
TU223959 other downstream 1753258 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 1768721 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 1948316 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 1948316 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 2993454 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile