RNA id: TU223269


Basic Information

Item Value
RNA id TU223269
length 397
lncRNA type sense_over
GC content 0.35
exon number 3
gene id G164903
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4395312 ~ 4439720 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgatgctcaactgacattcaactaacactgaattgaatgtccattaaatttaacttaaccctatgttgaatgtaaatgattcaaaatagaacctaaccctacacctaaccctaaccttaacccttaatcaaccataaaatctaaccctacacctaaccctaaccttaaccattaatcaaccctaaaatcaaaccctacacctaaccctaaccttaaccattaatcaaccctaaaatcaaaccctacacctaaccctaaccctaaccttaacctaagcttaaaatctaaccctacacctaaccctaaccttaacctaagcttaaaatctaaccctaaacccaatcctaaaatattaagataagcgtttgggttagagttgaatgtagggttatattc

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223267 lncRNA upstream 3633 4391382 ~ 4391679 (+) True G164902
TU223257 lncRNA upstream 46657 4348249 ~ 4348655 (+) True G164893
TU223252 lncRNA upstream 104748 4290316 ~ 4290564 (+) True G164888
TU223197 lncRNA upstream 385292 3967496 ~ 4010020 (+) True G164845
TU223196 lncRNA upstream 385292 3973947 ~ 4010020 (+) False G164845
TU223263 lncRNA downstream 10259 4449979 ~ 4491709 (+) True G164899
TU223274 lncRNA downstream 12328 4452048 ~ 4454815 (+) True G164907
TU223278 lncRNA downstream 62228 4501948 ~ 4503411 (+) True G164910
TU223313 lncRNA downstream 177083 4616803 ~ 4650893 (+) True G164944
TU223323 lncRNA downstream 258612 4698332 ~ 4736710 (+) True G164952
XM_007253262.3 mRNA upstream 351719 4039986 ~ 4043593 (+) True LOC103033219
XM_022680069.1 mRNA upstream 1383422 2912007 ~ 3011890 (+) True cps1
XM_022680068.1 mRNA upstream 1520246 2660455 ~ 2875066 (+) True map2
XM_022680066.1 mRNA upstream 1739598 2604058 ~ 2655714 (+) True kansl1l
XM_022680063.1 mRNA upstream 1921415 2440656 ~ 2473897 (+) True LOC103024889
XM_022680077.1 mRNA downstream 231412 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA downstream 231427 4671147 ~ 4734221 (+) True hibch
XM_007253246.3 mRNA downstream 317024 4756744 ~ 4760314 (+) True mstn
XM_007253245.3 mRNA downstream 370828 4810548 ~ 4817692 (+) False ormdl1
XM_007253244.3 mRNA downstream 372982 4812702 ~ 4817692 (+) True ormdl1
TU222840 other upstream 1902321 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 2557225 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 2560678 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 2914578 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 3823119 538279 ~ 572193 (+) True G164126
TU223959 other downstream 1705217 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 1720680 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 1900275 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 1900275 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 2945413 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile