RNA id: TU223274


Basic Information

Item Value
RNA id TU223274
length 2742
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G164907
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4452048 ~ 4454815 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaacacttagaatagatcactctgtgtttaatacatctatataatatatgaatttcacattctGAACCGAGTTACTGattttcaatgatattgatgatgatatttttttaagatgcacctgtatcACGAGCATGAGCATCTTTGGCATGTCACtctattactaatattattatttattttttcacttttaatcaAAGGAACTGCAGTCAACGAAAGACACcattcacttatttatttatttatttttttcacttatttatttatttttgcgaACCTCTCACTAGCAAATCCAGCCCGCACCTCTTCACCTCACTCAGATCGCGCTCTTCGTGTTATTCCGTTCGGCTGTTCCTCTGGGAACGCAGCTCAAACATGTCCAAAACCAGGTGGAAGAGTTCAGAGCTAATCCTTCCTCTGCCTTCAGGCTTTAGAGGGATTCGAGTCTTGCCAAACCACTCTGTCTTTGGCTCCATGTTTAAAAGCGCCTTCAAAGCACAGGGAGGATCTTTTACCTGGGCCTTTATCAAATGAATTGAAAAGATTGAATTTATCCCCCCAATTGCCCCAATTATGATCTCCTGATACACGCAGCCTCCTGCTGAGGAAGTCCCAGTCCCATTACCACTGATCACAGTCTCAGCCTCACGCCAGGATGTAACCagcttgtgttttatttaaacgAATGAAGCGAGTGCCAGAATGCAGTGgacacattttctttcttttttttttttcttgcgaCTTTAAGCTACCTTCAATGCCATTAAACCGTGTCTGACATTCTTGGAATAGTGCACATTGGTTTACGCCGAGACGACGCTGGCGGTGACGAGGGCGCCAATGACCTTGGGATGCGAGACAAGTGTGTGAATGACATCATTAATTACTGTTCATTCGTGACTTCTGTTACCTGTTACTCACTGGTCACTGTTGCACTGCTGAGGAGAAAGAacgaggagaagaagaagaaggattTAAAGCATCTCCCGTCTGTTCATTTATGACAATCATTAagttaaataacactgtttaaaaactgtTGAATCTAAGCCTGGCCATGCCTGTCCATGGCCTCCACCATGGACCCCATTAGACCTTTCGTAAAAAACACTTTCGTACATATGGCCGACCTTCTTCTCCGCTTTGCAGCCAGTTGATCCCTAAAGACAAGAGGATCCCTAAAgaaatgaaaggaataaagggataaaaggaggattTTCAGCCACTGTGGAAGTGTTCACCAAAGTGTCTGTCTGTTCCAGTCTGAAGCACTCACGCTCATTCACGCTCCGTTTTTGTAAGAGTGAACCACAGCCCTTTTTCGAGACACCGACTAACTGTAGCTGGAAGCTATGAAAgattgttctctttttttctaaacaGAAACTGTTATATTGAATTTGTGCCTGAAAACATACTGTTAAACCAACAATCAAGCTTTTATTACAGACGGGCACTAAGGGTCATTCTTAAAAGCAAACTGTCATTTCCTATAGCCACTGTTTAATatagtaatgtttattattcaaGGTACATATTGTTATTACTCTATATCAATTCAGAAACAGATGAATATATTTAAGAGATGCTTAAAAGAAAAGATGACGAACAGAAGTGTTTTGCCAGAAAATGCTGAACAATGTTGATTCTAGTGTACATCGATCAAGCAACAACACGTAATTATGAtgttcctcctttttttttttttttttccaagctcAACTGAGCCTATAGGagcacttaagtttctgaataagtttctttgattttgctttgctatttataggtttatgtctgagtaaaatgaacattgttgttttattctataaacgatatatttctcccaaattccacataaaaatagtgtcatttagagcatttatttgcagaaaatgagaactaACAAAAgaacagacctcaaataacgcaaagaacaaaaaaacaagttcatattcataaagagttttaagagttcagaaatcaatgtttggtggaataaccctggttctccaccagtcttacacactgatttgcttttggataacttcatgctgctttactcctggtgcaaacattcaagcagttcagtttggtggtttaatggcttgtgatcatccatcttcctcttgattatattccagaggtttctaatttggtaaaatcaaagaaactcataatttttaagtggtctcttcagagctgtataattacATACTGTAGTCCCATTTAAGTactacctgtttttttttttttttccctttacccTGTTTCCTAATGTTCAGGACCCCACAaaatagaccaccacagagcaggtttTATTATTTGGTGGGTTGTTGGGTTATTCTCATTCTCAACACTGCATGCAGTGATTAACACGGATTGGCTCATTGGTGGTGGTTTGAGGTGATAGTGAGGTGTAAAGTGTGTATGTTAGTAGAGCTGTgtgtacgagtggatcagacgcagcagtgctgcttgagtttttaaacacctccgTCTTCAGTGCCACTGCTAGTTCTCTTCAGTGCAGTGGTTCTGCTTGATCGATGTACAGTTGAACACACCTAAAGCCAAACGCTTGTGTTCTTCATCCAGAGTTTAAACCAATCCAAGGTGCCCTTCATGCTGTACAGACGTGTAAATATCTTCTCCAAGCATACAGTGTGTATTCTCAATCCAGAGGTTTAAAAAGAGGGGACaaaatgtgtattattatttatgaagACAAAAACTATTTTGTT

Function

GO:

id name namespace
GO:0051962 positive regulation of nervous system development biological_process
GO:0051963 regulation of synapse assembly biological_process
GO:0051965 positive regulation of synapse assembly biological_process
GO:0051240 positive regulation of multicellular organismal process biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0050807 regulation of synapse organization biological_process
GO:0007416 synapse assembly biological_process
GO:0051094 positive regulation of developmental process biological_process
GO:0051960 regulation of nervous system development biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04514 Cell adhesion molecules
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223269 lncRNA upstream 12328 4395312 ~ 4439720 (+) True G164903
TU223270 lncRNA upstream 12328 4395312 ~ 4439720 (+) False G164903
TU223267 lncRNA upstream 60369 4391382 ~ 4391679 (+) True G164902
TU223257 lncRNA upstream 103393 4348249 ~ 4348655 (+) True G164893
TU223252 lncRNA upstream 161484 4290316 ~ 4290564 (+) True G164888
TU223278 lncRNA downstream 47133 4501948 ~ 4503411 (+) True G164910
TU223313 lncRNA downstream 161988 4616803 ~ 4650893 (+) True G164944
TU223323 lncRNA downstream 243517 4698332 ~ 4736710 (+) True G164952
TU223365 lncRNA downstream 439330 4894145 ~ 4896061 (+) True G164990
TU223402 lncRNA downstream 561919 5016734 ~ 5056807 (+) True G165013
XM_007253249.3 mRNA upstream 3428 4379022 ~ 4448620 (+) True vwc2l
XM_007253262.3 mRNA upstream 408455 4039986 ~ 4043593 (+) True LOC103033219
XM_022680069.1 mRNA upstream 1440158 2912007 ~ 3011890 (+) True cps1
XM_022680068.1 mRNA upstream 1576982 2660455 ~ 2875066 (+) True map2
XM_022680066.1 mRNA upstream 1796334 2604058 ~ 2655714 (+) True kansl1l
XM_022680077.1 mRNA downstream 216317 4671132 ~ 4734221 (+) False hibch
XM_022680078.1 mRNA downstream 216332 4671147 ~ 4734221 (+) True hibch
XM_007253246.3 mRNA downstream 301929 4756744 ~ 4760314 (+) True mstn
XM_007253245.3 mRNA downstream 355733 4810548 ~ 4817692 (+) False ormdl1
XM_007253244.3 mRNA downstream 357887 4812702 ~ 4817692 (+) True ormdl1
TU222840 other upstream 1959057 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 2613961 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 2617414 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 2971314 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 3879855 538279 ~ 572193 (+) True G164126
TU223959 other downstream 1690122 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 1705585 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 1885180 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 1885180 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 2930318 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile