RNA id: TU223687


Basic Information

Item Value
RNA id TU223687
length 249
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G165229
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 5583527 ~ 5585118 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgttttttggatgcaatacgggttagcacccgaacatcgctttcagacagcttcctcttacagcatccacagttaatcctgttggatgtggttggtccttctttaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223621 lncRNA upstream 70234 5504741 ~ 5513293 (+) True G165176
TU223600 lncRNA upstream 250408 5332779 ~ 5333119 (+) True G165159
TU223448 lncRNA upstream 277084 5305742 ~ 5306443 (+) True G165053
TU223435 lncRNA upstream 287973 5285723 ~ 5295554 (+) True LOC103021746
TU223436 lncRNA upstream 287973 5285723 ~ 5295554 (+) False LOC103021746
TU223697 lncRNA downstream 26194 5611312 ~ 5649236 (+) True G165238
TU223738 lncRNA downstream 127562 5712680 ~ 5729989 (+) True G165273
TU223741 lncRNA downstream 133927 5719045 ~ 5719974 (+) True G165276
XR_002651321.1 lncRNA downstream 159784 5744902 ~ 5747277 (+) True LOC111194877
XR_002651320.1 lncRNA downstream 162203 5747321 ~ 5762851 (+) True LOC111194876
XM_007253221.3 mRNA upstream 146295 5423935 ~ 5437232 (+) True LOC103047200
XM_022680099.1 mRNA upstream 146295 5423935 ~ 5437232 (+) False LOC103047200
XM_007253222.3 mRNA upstream 146295 5423935 ~ 5437232 (+) False LOC103047200
XM_007253224.3 mRNA upstream 278418 5300599 ~ 5305109 (+) True LOC103021436
XM_007253225.3 mRNA upstream 284799 5268039 ~ 5298728 (+) False LOC103021746
XM_022679998.1 mRNA downstream 43871 5628989 ~ 5638938 (+) True btla
XM_022680107.1 mRNA downstream 216773 5801891 ~ 5834662 (+) True maats1
XM_022680108.1 mRNA downstream 250363 5835481 ~ 5862907 (+) True nr1i2
XM_022680112.1 mRNA downstream 532246 6117364 ~ 6123051 (+) True LOC107196936
XM_022680114.1 mRNA downstream 532246 6117364 ~ 6123051 (+) False LOC107196936
TU222840 other upstream 3090536 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 3745440 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 3748893 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 4102793 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 5011334 538279 ~ 572193 (+) True G164126
TU223959 other downstream 559819 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 575282 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 754877 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 754877 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 1800015 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile