RNA id: TU223697


Basic Information

Item Value
RNA id TU223697
length 2228
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G165238
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 5611312 ~ 5649236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacacacacacacacacacacacacacacacacacacacacaaccacagacacacacagccacagacAGAGCCCCATACCCACCCACTGAGGCTAATGCATTCTGCACTGGAACACTTGGCACCATTACGGTCCTCTCCTGACGCCCCGCTGCTGCATCAGCTGATGCCCTCGcctgcacacactgcacacacagccTGAGAACAAAGACGCGACCTGTCTGCAAACACATtgacacgcacgcacacacacacacacacacttccaggAAAATGACGCAAACACAGAATGAGTGTATCAACAGCTATAGTGTCAACAGCTTCACAGCCTCGTAGTGCCACACTTGTTTCACACTTGTACTTAAAGAAGGTGCTCTAGAATCAAAAAACTGTACTTATCTTGTTTTGCAGAAAACTGAGAAATTAGCACATTCAACTGACATGCTGTGAAGCTCAAACACTGCTGTCTCTTCCCTCAAAACCAAAACCTTCATAACAAAAACACTGgtcttaccgtatttttcacactataaggcgctcctaattataaggtgcattatataagtcaaacaagtgctggatattaatctacacatatttctctcctggaaactgttcattttcttttatctacagtaagcttagatttccagatttctgaggaaccttgagtgttttggtaacccagggcgatatcagctagcggtttgccccatgtagcttgttttaacacgataaacacacagactacagtccaatatactccctTCTGAAAGGCTTAAGAGCTAATTAGCATTTAGCGCtagggtaatgctaatgttgctccagcactgctagccagggttagcagcaggctacagtctaacATACTCGTCTCTGAATGGTTAAAGAGCTATCTAGCATTTAGCGcaattagtggctaatgctactgcagctccaacagtgctagcgaGGGGTTAGGatcaggctacaggccgataatactcacctttgaatggaAAAGAGGAagcacttagtgtggttagcagctaatgctaatactgctccagtcttaagtgctggagaactaaactatagaactaaactaaactaaaataaactttactgctcctttcaACCTAACCGGTGAAATtaatacataagatgcactggattataaggtgcactgacgatttggGGGAAAATtgaaagtgcaccttatagtgcgaaaaatacagtattcaaaaacatcaaaattGTTATGTAACAGTTGTGTCTTGactcattatatttaatatacttacACCCCAACAACTAACATTCACCCACATAACTAGAGAAAGCTGTGTGAGCTCCCACAATAGAGTTTAGCTTCTTACCGGgagctaggctaaaagctatcCCTACCAGTCCTTACTATACTCTCCTTAGCTAGCTTATCACAAAGATCCCAGGGTTCCAGAAATCCCAGAAAGGAGTTATTTCAGCTCTATCCTTAGCTGGGGTATGCTATGCATTTACTGTGAGCCATCGTTGTGGCACTTAAAAGATGAACTTCTCAATTTTTTCCCCATAAgcgctttataaaagaaaaccatcatatTTTATtctgaggcaaaataacagggtggtaCGTAGGTTTGTTAAactgcatttaaacattttctaatcATATTTACTAATCATACAACTTAATGcactattaatgcattatattgcACCTTcaatttacatttcttttttttgctggaaAACTTACCATTTTATTGGGTCTCATGTCAAATTTTTGATCATATCAAACATCCTTAACTCTCATAATGAGTTCAGACATGATAATCCCAGTATATTAAAGTGTTTTAGTGAAAGGAACTGAAAGAACTTGTCACAATCGCCAGTGGGAGATGTGAAAAGTGCTACATGAAGTTAAATCTAAGTGTACACAAAGCCCTTGGTATACAATACAAAATGCTACAAAAAATAGCCAACGTTTTTGCTTGACAGtaataatactatatattaaaaatacagatatcttattagtgtttttttgaaATTCTGGGCAGAGTTTCTTTGAAAGATCACGGCCGGGTAAACTGAGCTGTAAACACTGCTGAGTTCGTGGCTCTGTACGATGCGCTGCAGGGAGGAGGAGTCTCAGTGCTCTCAGTTATCTCTCTGATTTAGAGCTGAAGCTCATCGTCTTCTTCTCCTTCAGACCCCTCAGGTGGTCTCTGCATGCTTCA

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223687 lncRNA upstream 26194 5583527 ~ 5585118 (+) True G165229
TU223621 lncRNA upstream 98019 5504741 ~ 5513293 (+) True G165176
TU223600 lncRNA upstream 278193 5332779 ~ 5333119 (+) True G165159
TU223448 lncRNA upstream 304869 5305742 ~ 5306443 (+) True G165053
TU223435 lncRNA upstream 315758 5285723 ~ 5295554 (+) True LOC103021746
TU223738 lncRNA downstream 63444 5712680 ~ 5729989 (+) True G165273
TU223741 lncRNA downstream 69809 5719045 ~ 5719974 (+) True G165276
XR_002651321.1 lncRNA downstream 95666 5744902 ~ 5747277 (+) True LOC111194877
XR_002651320.1 lncRNA downstream 98085 5747321 ~ 5762851 (+) True LOC111194876
TU223753 lncRNA downstream 101447 5750683 ~ 5753452 (+) True G165283
XM_007253221.3 mRNA upstream 174080 5423935 ~ 5437232 (+) True LOC103047200
XM_022680099.1 mRNA upstream 174080 5423935 ~ 5437232 (+) False LOC103047200
XM_007253222.3 mRNA upstream 174080 5423935 ~ 5437232 (+) False LOC103047200
XM_007253224.3 mRNA upstream 306203 5300599 ~ 5305109 (+) True LOC103021436
XM_007253225.3 mRNA upstream 312584 5268039 ~ 5298728 (+) False LOC103021746
XM_022680107.1 mRNA downstream 152655 5801891 ~ 5834662 (+) True maats1
XM_022680108.1 mRNA downstream 186245 5835481 ~ 5862907 (+) True nr1i2
XM_022680112.1 mRNA downstream 468128 6117364 ~ 6123051 (+) True LOC107196936
XM_022680114.1 mRNA downstream 468128 6117364 ~ 6123051 (+) False LOC107196936
XM_022680113.1 mRNA downstream 468128 6117364 ~ 6123051 (+) False LOC107196936
TU222840 other upstream 3118321 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 3773225 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 3776678 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 4130578 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 5039119 538279 ~ 572193 (+) True G164126
TU223959 other downstream 495701 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 511164 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 690759 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 690759 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 1735897 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile