Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU223738 |
| length | 588 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 4 |
| gene id | G165273 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035915.1 |
| NCBI id | CM008318.1 |
| chromosome length | 35429340 |
| location | 5712680 ~ 5729989 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0016064 | immunoglobulin mediated immune response | biological_process |
| GO:0002250 | adaptive immune response | biological_process |
| GO:0002252 | immune effector process | biological_process |
| GO:0002253 | activation of immune response | biological_process |
| GO:0072376 | protein activation cascade | biological_process |
| GO:0030163 | protein catabolic process | biological_process |
| GO:0006956 | complement activation | biological_process |
| GO:0006958 | complement activation, classical pathway | biological_process |
| GO:0006959 | humoral immune response | biological_process |
| GO:1901565 | organonitrogen compound catabolic process | biological_process |
| GO:0009057 | macromolecule catabolic process | biological_process |
| GO:0048584 | positive regulation of response to stimulus | biological_process |
| GO:0002376 | immune system process | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0048884 | neuromast development | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0002682 | regulation of immune system process | biological_process |
| GO:0002684 | positive regulation of immune system process | biological_process |
| GO:0050776 | regulation of immune response | biological_process |
| GO:0050778 | positive regulation of immune response | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0002443 | leukocyte mediated immunity | biological_process |
| GO:0002449 | lymphocyte mediated immunity | biological_process |
| GO:0002455 | humoral immune response mediated by circulating immunoglobulin | biological_process |
| GO:0002460 | adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | biological_process |
| GO:0019724 | B cell mediated immunity | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU223697 | lncRNA | upstream | 63444 | 5611312 ~ 5649236 (+) | True | G165238 |
| TU223687 | lncRNA | upstream | 127562 | 5583527 ~ 5585118 (+) | True | G165229 |
| TU223621 | lncRNA | upstream | 199387 | 5504741 ~ 5513293 (+) | True | G165176 |
| TU223600 | lncRNA | upstream | 379561 | 5332779 ~ 5333119 (+) | True | G165159 |
| TU223448 | lncRNA | upstream | 406237 | 5305742 ~ 5306443 (+) | True | G165053 |
| XR_002651321.1 | lncRNA | downstream | 14913 | 5744902 ~ 5747277 (+) | True | LOC111194877 |
| XR_002651320.1 | lncRNA | downstream | 17332 | 5747321 ~ 5762851 (+) | True | LOC111194876 |
| TU223753 | lncRNA | downstream | 20694 | 5750683 ~ 5753452 (+) | True | G165283 |
| TU223802 | lncRNA | downstream | 135477 | 5865466 ~ 5868000 (+) | True | G165316 |
| TU223811 | lncRNA | downstream | 142252 | 5872241 ~ 5931151 (+) | True | G165323 |
| XM_022679998.1 | mRNA | upstream | 73742 | 5628989 ~ 5638938 (+) | True | btla |
| XM_007253221.3 | mRNA | upstream | 275448 | 5423935 ~ 5437232 (+) | True | LOC103047200 |
| XM_022680099.1 | mRNA | upstream | 275448 | 5423935 ~ 5437232 (+) | False | LOC103047200 |
| XM_007253222.3 | mRNA | upstream | 275448 | 5423935 ~ 5437232 (+) | False | LOC103047200 |
| XM_007253224.3 | mRNA | upstream | 407571 | 5300599 ~ 5305109 (+) | True | LOC103021436 |
| XM_022680107.1 | mRNA | downstream | 71902 | 5801891 ~ 5834662 (+) | True | maats1 |
| XM_022680108.1 | mRNA | downstream | 105492 | 5835481 ~ 5862907 (+) | True | nr1i2 |
| XM_022680112.1 | mRNA | downstream | 387375 | 6117364 ~ 6123051 (+) | True | LOC107196936 |
| XM_022680114.1 | mRNA | downstream | 387375 | 6117364 ~ 6123051 (+) | False | LOC107196936 |
| XM_022680113.1 | mRNA | downstream | 387375 | 6117364 ~ 6123051 (+) | False | LOC107196936 |
| TU222840 | other | upstream | 3219689 | 2490044 ~ 2492991 (+) | True | G164539 |
| TU222580 | other | upstream | 3874593 | 1834813 ~ 1838087 (+) | False | LOC103028062 |
| TU222588 | other | upstream | 3878046 | 1822868 ~ 1834634 (+) | False | LOC103028062 |
| TU222476 | other | upstream | 4231946 | 1478706 ~ 1480734 (+) | False | LOC103047444 |
| TU222238 | other | upstream | 5140487 | 538279 ~ 572193 (+) | True | G164126 |
| TU223959 | other | downstream | 414948 | 6144937 ~ 6145969 (+) | True | G165406 |
| TU223975 | other | downstream | 430411 | 6160400 ~ 6237986 (+) | False | LOC111194881 |
| XR_002651330.1 | other | downstream | 610006 | 6339995 ~ 6345403 (+) | False | wdr4 |
| XR_002651331.1 | other | downstream | 610006 | 6339995 ~ 6345403 (+) | False | wdr4 |
| TU224375 | other | downstream | 1655144 | 7385133 ~ 7429366 (+) | False | LOC103040759 |
