RNA id: TU223753


Basic Information

Item Value
RNA id TU223753
length 248
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G165283
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 5750683 ~ 5753452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctcTTCAAACTGACAGAATATCAAACATAAATTTCGGCTCCCCTTAATCCGAcagaataccaaacacacaaacacagctccCCTCAAACTGACAGTTACAGTAATCAAAATGCCATCTCGTTCCACTGTACTCAGGTTTGAGGTCACACGACTTATTCAGACTCATGTTTTCAGTTTCACGTTCACggtggtctaaaaaaaaaaaaaaaaaaaaaaaagcaaacaaacaaaggaaACCTCAGTTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651321.1 lncRNA upstream 3406 5744902 ~ 5747277 (+) True LOC111194877
TU223738 lncRNA upstream 20694 5712680 ~ 5729989 (+) True G165273
TU223741 lncRNA upstream 30709 5719045 ~ 5719974 (+) True G165276
TU223697 lncRNA upstream 101447 5611312 ~ 5649236 (+) True G165238
TU223687 lncRNA upstream 165565 5583527 ~ 5585118 (+) True G165229
TU223802 lncRNA downstream 112014 5865466 ~ 5868000 (+) True G165316
TU223811 lncRNA downstream 118789 5872241 ~ 5931151 (+) True G165323
TU223812 lncRNA downstream 118789 5872241 ~ 5931151 (+) False G165323
TU223816 lncRNA downstream 123972 5877424 ~ 5878740 (+) True G165326
TU223852 lncRNA downstream 244575 5998027 ~ 6002247 (+) False G165343
XM_022679998.1 mRNA upstream 111745 5628989 ~ 5638938 (+) True btla
XM_007253221.3 mRNA upstream 313451 5423935 ~ 5437232 (+) True LOC103047200
XM_022680099.1 mRNA upstream 313451 5423935 ~ 5437232 (+) False LOC103047200
XM_007253222.3 mRNA upstream 313451 5423935 ~ 5437232 (+) False LOC103047200
XM_007253224.3 mRNA upstream 445574 5300599 ~ 5305109 (+) True LOC103021436
XM_022680107.1 mRNA downstream 48439 5801891 ~ 5834662 (+) True maats1
XM_022680108.1 mRNA downstream 82029 5835481 ~ 5862907 (+) True nr1i2
XM_022680112.1 mRNA downstream 363912 6117364 ~ 6123051 (+) True LOC107196936
XM_022680114.1 mRNA downstream 363912 6117364 ~ 6123051 (+) False LOC107196936
XM_022680113.1 mRNA downstream 363912 6117364 ~ 6123051 (+) False LOC107196936
TU222840 other upstream 3257692 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 3912596 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 3916049 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 4269949 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 5178490 538279 ~ 572193 (+) True G164126
TU223959 other downstream 391485 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 406948 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 586543 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 586543 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 1631681 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile