RNA id: TU223816


Basic Information

Item Value
RNA id TU223816
length 237
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G165326
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 5877424 ~ 5878740 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTAAATCAGTCAGCACACAGCATCAGTCAGTaaacCAGTCAGCACACAGCCTCAGTCAGCACACAGCCTCAGTCAGTaaaccagtcagcacacagcctCAGTCAGTaaaccagtcagcacacagcctCAGTCAGTaaaccagtcagcacacagcctCAGTCAGTAAAACAGTCAGCACACAGCCTCAGTCAGTAAAACAGTCAGCACACAGCCTCAGTCAGTaaaccagtcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223802 lncRNA upstream 9424 5865466 ~ 5868000 (+) True G165316
XR_002651320.1 lncRNA upstream 114573 5747321 ~ 5762851 (+) True LOC111194876
TU223753 lncRNA upstream 123972 5750683 ~ 5753452 (+) True G165283
XR_002651321.1 lncRNA upstream 130147 5744902 ~ 5747277 (+) True LOC111194877
TU223741 lncRNA upstream 157450 5719045 ~ 5719974 (+) True G165276
TU223852 lncRNA downstream 119287 5998027 ~ 6002247 (+) False G165343
TU223840 lncRNA downstream 119297 5998037 ~ 6004101 (+) True G165343
TU223842 lncRNA downstream 119297 5998037 ~ 6002247 (+) False G165343
TU223843 lncRNA downstream 119297 5998037 ~ 6004101 (+) False G165343
TU223846 lncRNA downstream 119297 5998037 ~ 6002247 (+) False G165343
XM_022680108.1 mRNA upstream 14517 5835481 ~ 5862907 (+) True nr1i2
XM_022680107.1 mRNA upstream 42762 5801891 ~ 5834662 (+) True maats1
XM_022679998.1 mRNA upstream 238486 5628989 ~ 5638938 (+) True btla
XM_022680099.1 mRNA upstream 440192 5423935 ~ 5437232 (+) False LOC103047200
XM_022680112.1 mRNA downstream 238624 6117364 ~ 6123051 (+) True LOC107196936
XM_022680114.1 mRNA downstream 238624 6117364 ~ 6123051 (+) False LOC107196936
XM_022680113.1 mRNA downstream 238624 6117364 ~ 6123051 (+) False LOC107196936
XM_015601229.2 mRNA downstream 238624 6117364 ~ 6123051 (+) False LOC107196936
XM_022680115.1 mRNA downstream 238624 6117364 ~ 6123051 (+) False LOC107196936
TU222840 other upstream 3384433 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 4039337 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 4042790 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 4396690 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 5305231 538279 ~ 572193 (+) True G164126
TU223959 other downstream 266197 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 281660 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 461255 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 461255 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 1506393 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile