RNA id: TU223843


Basic Information

Item Value
RNA id TU223843
length 3627
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G165343
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 5998027 ~ 6004101 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAACAATTCTTTATTGACATTCAGTACAGAGCCAAAAGTCTTAATACAAGTAAACTTAAATCAAGTTAAACAAGACTTTACACTGGAATGGATGAATTGTCTTACACTCttcaaaataaaggtgcttcaaatagtacatttaaacaaatacagcAAAACAATCAATGTAGTTCATCAAATGAACTAACAGGCTTGAATTgcttctggattttttttactgtaaaatacttttttatgctttttaaccATTTACCCAATTATGGTTCTTCTTTGGCACAACTAAAATAATCTTTCGAAGcttcatttttaagagtgtagttGGTGTGAAATGACAAATTGCAATCAGTCACTCACTGCATAACTTCTGCATAACTATCATAATACTGCAAAGTTCCTCATGGACTCCTACAACAGATGGTTAGAGTTAGATATGAGAAGGCCATTCTACCTGTGGCGCtaaggatatatatatttaaggcaCTCGTTACCACAAAAGATCCTTAATATTAGTGGAATTTAGtggaaaatgaaggaaaaaagcTAACACACTCTTATATCCACTCtctcttacacatacacacacatatacatttgcaggtacacacacactcagcaagAATGCATCGAAGCTAAAGAGGTGACAGCGATTCTAATCCTTATTCTGACCGCTCTTTGAAATAAAAGGTATAGTGTTGTTGCTGGGTCCAGAGTAGTGGTTTACCTGGAGgttttgtaaaacatttaaacaacctAAACATCATGCTTTGGTTTCAGGCGACCCTGCTTATGCTCATCCCGTTCAGTGCCATCAAACGCTCGCAGAATGAAAAAAGCGCAGTAAAATTGGACACATTAACACTGGTCATAATTCAGCAGTGCTCAGATTTCTGTCTTTCACTAAGATGGTTCATGTAGCTTTTAATCATATTCATAATCCCAAAATGAGCCAATTCTAACAGAAATGAGCACAGCAATAGAGCTGCAACACTGACTATTCCTACATAAAGCAACTAAACTACAGGCAGGAGAAGCAGGTCCAACACAGAAGCATCTGATCTGTTCCTAGAAAGCGTTCCTGTCTGAATAGAGATAAAAGGAACAGAGTGCTCTGTCTGGTCAAACCACAGGCTGTTCACAGGCGACCTGAAGGAAGCAATCTTATCAAAGCAGAATTACATAATCAAAATGATCCAGACCCTCTATCACAAAGATTAAGAGTCAGCAATAGGCTTAATAGATACAGTCAATCCCAAAGATGTTCATCAGAGCTTCATAACTCCATTTTATCCCAACACTTATCAATAGAGCTTCATGACTCCAAGTTTCATTGGCTCAACTCATCCCAGGACTTTAATAATCCATCTCATCACAAAGGTGTTTAGCAGAACTTCATAACTCCATCTTATCTTATCAGTTTTTAATAGAGCTTGATTGGTTCAACTCATCCCAATGGCATTTATGTTTTATAGCATAATTTCAAATCATCATCCCAAAAAAGTTCCACCAAGGTTTAtgactccaactcatcccaaaagcatTCAACAGAGCTTCATGACTTATTGTTACAACTCATCTCAAATGTGTTTTCATGAATTTCTTTACTCAAACTTCTACCAAAAAGTGTATAACAGAGCTTTGTGACTCAAATATTCATTGCTACAACTCATCCAAGTGGTTAGTAGATATTTTTCACTCCAACTTAAGCATTCCAAATGTGTTCAGTACAGATTTGTCagtccaactcatcccaaaggtgttTAGTAGATTTGTCAGTCCAACTCATCCAAAAGTTGTTCAGTAGTGATTTGTTagtccaactcatcccaaaggcaTTTAGTAGAGATTTGTCagtccaactcatcccaaaggtggTCAACAGAGATTTGTCACTCCAACTCATCCATCCCAAAGGTGTTCAGTATTAATTTGTTAGTCCAACTCATCCATCTCAAAGGTGTTCAGTATTAATTTGTCAGTCCAACTCATCCCAGAGGTGTTCAGTAACGATTCGTCagtccaactcatcccaaaggtgaAGGTGGTGCTTTGCCATTCCAAAGATCATACTTTGACTGCTCTCTACAATCCATTGTTAGCAGGTTTACACTCCTCTAGCCAGTACTtaagattgtgtgtgtggtgaccTTAAGCATTTGTGCTGTTCCAAAGCATtccattttcatttaaatgctttccTGTGGAGATTATATGACTGCATTCATTTCAAGGCTTGTGTCAGCAATGGTTGCACCATGCAGTAACTGAATCTGCTAATTAGAAGAGGCGTCTGGATAATTTTGGGTATGTAGCATGTCATCCAAAATTCTGACCATACCACAGTTCTCCCAATGCCTGAGTCTTCTGGGTCTCTGCTTTAGCACTATAAGCTatctactacttctactactactacgcAAACTAGAAGTAATCTAGAAGTACGCATGCAAGAGGGCAATACTGCAAACAGAAGAATACGTATTAGCACCTTTTTGAAAGGTCTCAAGACTATGACTGCCTTGTctctgtggagagagagagagagagagagagagagagagtgtgaaggaGACAtgaaacgtgtttttttttaataccctgAAAAATGTAGGGCATGTCATCACAGCTGATCTTATTGATTCATTCTCCCTCCATCACACTTCTTCTCCATCTAACTGCCATTGTCTCAATCAAAAGCAACATGTATACAAAACCTAAATCTAATAGACAAatacatggtaaaaaaaatcataatacagtacataaaaaaataacaacagcGTACAAAATAGCCCCTATATAAAGTGCTGGGGCCTCTTAGGCAAGGCTTAGAGTgatacaacaaaacaaaaagtacaGCACTTGGTGATACGCAGACGTACAAAACATTATCAGACATTATTAGGCTAAAAGTAGAATTGGGCTACAACTGCGATCTAACAAACATCGACTGAAAAATCGATTATAACGACGTTACACAgaaagagaataataataatagataaacAGACTATATTCATAgagataaaacaataaaatggtGTGGTTCTCCCAGCAACAGTACGTCATCTCAGGAGTCCTGATTGTGGTCAGTAGGAGAGGAAACTCAtcccctctgtctctccttcttcCTTCTCACCCCTCTTCACCCTCGTTTGCCTGGACTTTAAACTTCCTTCGTGCTGGACTTCATCTTCTCCACTGTCTCCTATAGAGGAAGAGAAGATGATTAAGAAGTTCAGTCTAGCTCGGTTTAGACCAGATTAATTTATAACATGGAGAGGTGGAGCAATGAAAATTTACAACAAGACATCTGTAAAGTTTATGACAGGTAGAAAACCTCATTATaaatgactgagatgggagCGGTTACTGGTACTTCATTtgtagtgtgtaaatgtgtagtgTGGTATGCGTGGCAAATTGGTTAGAGTGAGCTAGTATTGAAATACGagttaaatctcataactaacactCACTCTCTTACACCCTTTACTCATTcttttgcttctctctctctatttctcttttacacacacatacatatacagaaCTACCTTTGTGTagatatattatgtttttttaaataaccttATTGTGGTGCATCATTGTGTGTGCAAAATATGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223811 lncRNA upstream 66886 5872241 ~ 5931151 (+) True G165323
TU223812 lncRNA upstream 66886 5872241 ~ 5931151 (+) False G165323
TU223816 lncRNA upstream 119297 5877424 ~ 5878740 (+) True G165326
TU223802 lncRNA upstream 130037 5865466 ~ 5868000 (+) True G165316
XR_002651320.1 lncRNA upstream 235186 5747321 ~ 5762851 (+) True LOC111194876
XR_002651307.1 lncRNA downstream 99087 6103188 ~ 6105756 (+) True LOC111194857
TU223944 lncRNA downstream 117905 6122006 ~ 6123049 (+) False LOC107196936
TU223954 lncRNA downstream 123734 6127835 ~ 6128123 (+) True G165402
XR_002651326.1 lncRNA downstream 133185 6137286 ~ 6142409 (+) True LOC111194880
XR_002651327.1 lncRNA downstream 133185 6137286 ~ 6141485 (+) False LOC111194880
XM_022680108.1 mRNA upstream 135130 5835481 ~ 5862907 (+) True nr1i2
XM_022680107.1 mRNA upstream 163375 5801891 ~ 5834662 (+) True maats1
XM_022679998.1 mRNA upstream 359099 5628989 ~ 5638938 (+) True btla
XM_022680099.1 mRNA upstream 560805 5423935 ~ 5437232 (+) False LOC103047200
XM_022680112.1 mRNA downstream 113263 6117364 ~ 6123051 (+) True LOC107196936
XM_022680114.1 mRNA downstream 113263 6117364 ~ 6123051 (+) False LOC107196936
XM_022680113.1 mRNA downstream 113263 6117364 ~ 6123051 (+) False LOC107196936
XM_015601229.2 mRNA downstream 113263 6117364 ~ 6123051 (+) False LOC107196936
XM_022680115.1 mRNA downstream 113263 6117364 ~ 6123051 (+) False LOC107196936
TU222840 other upstream 3505046 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 4159950 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 4163403 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 4517303 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 5425844 538279 ~ 572193 (+) True G164126
TU223959 other downstream 140836 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 156299 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 335894 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 335894 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 1381032 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile