RNA id: XM_022680112.1


Basic Information

Item Value
RNA id XM_022680112.1
length 1315
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC107196936
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6117364 ~ 6123051 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACTTCCTAGTGTACTCAGAAGAAGATCTTACACAAGGCTACAACTGTAAAATacccttttttatttgatttaatcacTCTGGGAACAGTGTTGATATGGCGGTTCTTCAGGCTGGGATTCTGCATCTGGCTCCTTGTATCCTGATGATTCTCCTGACCTGTGGAGacttAACCGAGGTATataagtttaaaatacttcactGGATCAACAAAACTGCTGATCAGGGTGAAACTgttgttttatactgtaatgGAAGTGAGGATAGTGGAGAAGATTTTGTTTGGCATAAGAATTGGAATGCTCTTTTTATCTACAGCCCCTTTATTAACCAAACTGTAACAAACTACACATCAAGCAGGATGAGTGTAGATCCCAGTGATCCACGGAAACTACAGATATCTAACGTTCAGCCTTCAGACGCAGGAACCTATCTATGCTTCCCATCAAGAATTCAATGGATTCTGACCATAAAAGattttaccaaggcaaatatttttaaacaatttccCTGGATCAACAAAACTGCTGATCAGGGTGAAACTGTTGTTTTACACTGTAATGGAAGTGAAGATAGTGGAGAAGATTTAGTTTGGCGTAAGGATGGGAATCTTCTTTTCGTCTACAGCCCCTTTATTAACCAAGCTGTAACAAACTACACATCAAGCAGGATGAGTGTAGATCCCAGTGATCCACTGAAACTACAGATATCTAACGTTCAGCCTTCAGATGCAGGAACCTATTCCTGCTTCCCATCAAGAATTCTATGGATTCTGACCATAAAAGGAATATCTGTGCCTGCGTCACACAAAAGCACTATTTTTATCATTGTCCGCTCAGTTGGAGGAGCTGTTGCAGTGGGCCTGTTGATCTTCTGTGCTGTTTGGATTCCTAGGAAATGTAAGAAGTGTGGGGGCTCTGCTCAGGGTGGAACAGGGGCTACAGTATAACAGGCATGAATGAAGCTGACATGGATCAATTTCACTGAACCTCCTTAGACTTCAGGGTCTTCAGATAGCAGGATCTACAGTGGATTCTCTGGCCAATCCTttctgaaaacaagaaaaaagtgattttactcATTTATAAACTCATTagctttttgtttaaattatgtgtcTTAGAAATGGAGTTAATTTGACTTAATGAACTGACAAACTGAACTGTACTGTAGTTAATAGTagtatttgtgtttttgctaCCTGAGTTAAACAAATTGATACTAACAAATGGGATTTATATGAAAAATGTCATTATTGTCGTCTATGACTGCAATAAATGTTTATGACTTCTAATAAATAGCCACCTGGTGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651307.1 lncRNA upstream 11608 6103188 ~ 6105756 (+) True LOC111194857
TU223840 lncRNA upstream 113263 5998037 ~ 6004101 (+) True G165343
TU223843 lncRNA upstream 113263 5998037 ~ 6004101 (+) False G165343
TU223852 lncRNA upstream 115117 5998027 ~ 6002247 (+) False G165343
TU223842 lncRNA upstream 115117 5998037 ~ 6002247 (+) False G165343
TU223954 lncRNA downstream 4784 6127835 ~ 6128123 (+) True G165402
XR_002651326.1 lncRNA downstream 14235 6137286 ~ 6142409 (+) True LOC111194880
XR_002651327.1 lncRNA downstream 14235 6137286 ~ 6141485 (+) False LOC111194880
XR_002651325.1 lncRNA downstream 14235 6137286 ~ 6139397 (+) False LOC111194880
TU223962 lncRNA downstream 23096 6146147 ~ 6158276 (+) True LOC103046189
XM_022680108.1 mRNA upstream 254457 5835481 ~ 5862907 (+) True nr1i2
XM_022680107.1 mRNA upstream 282702 5801891 ~ 5834662 (+) True maats1
XM_022679998.1 mRNA upstream 478426 5628989 ~ 5638938 (+) True btla
XM_007253221.3 mRNA upstream 680132 5423935 ~ 5437232 (+) True LOC103047200
XM_022680117.1 mRNA downstream 56904 6179955 ~ 6199753 (+) True LOC111194881
XM_022680652.1 mRNA downstream 166499 6289550 ~ 6293768 (+) True LOC103026554
XM_015601225.2 mRNA downstream 173135 6296186 ~ 6307328 (+) True tmprss3
XM_007241745.3 mRNA downstream 216944 6339995 ~ 6345403 (+) True wdr4
XM_007241746.3 mRNA downstream 216944 6339995 ~ 6345403 (+) False wdr4
TU222840 other upstream 3624373 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 4279277 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 4282730 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 4636630 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 5545171 538279 ~ 572193 (+) True G164126
TU223959 other downstream 21886 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 37349 6160400 ~ 6237986 (+) False LOC111194881
XR_002651330.1 other downstream 216944 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 216944 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 1262082 7385133 ~ 7429366 (+) False LOC103040759

Expression Profile