RNA id: XM_022680117.1


Basic Information

Item Value
RNA id XM_022680117.1
length 949
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC111194881
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6160400 ~ 6237986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtcATCATCCCATACGATAAAGCAGAAAGTGTAAACGGATTTGGAGACAGAATAGAATTTGTTGGAAACACAAAAGAATATAACGGCACAGTTCGTATGAAGAACGTCACATCATTAGACCATCAAATCTACACATGCATCTTCAACATCTTCCCAAGTGGGCCttttgaaaaagaaataaatcttaACGTATACGTTCCTCCTGAGGTCAGTGTATTTCCTGATGTTACTCCTGTTGTTGGTGATTCTGAAGTGATCCTAGTTTCCTGCATTGCAACATCTCGACCTGTATCAGAAGTGACCTGGAATCTGGGTGATCTCAATAGCTCTCTGAAGATAAAGACTGATGTGTCTGCAGGACCTAACGATTACTACACTGTCAGCAGCCGCCTGATTGGTGTACCATCCAAAGAGCTAAACGAGCAGAATGTCCAGTGTGTGGTCAATCACACCAGTCTAAAAAAGGAGATTGTTCTAAACTATGCACTCGTCATTCATTATCCTCCCCAGATTGTGTATATTACTTCAGTTAATCCTCCCACAACGCATCAAGAATTCCTTTGTATAGCAGTTGCCAATCCAAAACCAACGCTGTACATCTGGAGCAGGGTGAACAAGACTCTTACTGGCAGAGTTGATGTTGATAGGCTGGAAATTCCACTAAACTCTGACAGCAACGGCTTGTATAAGTGTAACGCTTCAAACCAGTATGGTAATGGAGTAGGAACTCTACGCATGCAGATTTCCACTGACTGTACCACCTGTTGGACGTCTTGCATCATTTGCATCTTTGTATCTGCTACTGCTCCTTTTTTATTATGGAAATGTTTCTCATCTGAAACATGCACCAAACAAATTTCAGATCTGAGAGAAAGAATTTTAACACTGCAGAGAACCTCGCCTCCATAGCCAAGAGCTCTACAGTGTTTCTACTACTTCCTGCGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223962 lncRNA upstream 21679 6146147 ~ 6158276 (+) True LOC103046189
XR_002651308.1 lncRNA upstream 25643 6146148 ~ 6154312 (+) False LOC103046189
XR_002651326.1 lncRNA upstream 37546 6137286 ~ 6142409 (+) True LOC111194880
XR_002651327.1 lncRNA upstream 38470 6137286 ~ 6141485 (+) False LOC111194880
XR_002651325.1 lncRNA upstream 40558 6137286 ~ 6139397 (+) False LOC111194880
XR_002651309.1 lncRNA downstream 42091 6241844 ~ 6243216 (+) True LOC111188246
TU223976 lncRNA downstream 43774 6243527 ~ 6243915 (+) True G165418
TU223990 lncRNA downstream 45498 6245251 ~ 6245640 (+) True G165432
TU224008 lncRNA downstream 47512 6247265 ~ 6247508 (+) True G165450
TU224036 lncRNA downstream 119566 6319319 ~ 6325758 (+) False G165469
XM_022680112.1 mRNA upstream 56904 6117364 ~ 6123051 (+) True LOC107196936
XM_022680114.1 mRNA upstream 56904 6117364 ~ 6123051 (+) False LOC107196936
XM_022680113.1 mRNA upstream 56904 6117364 ~ 6123051 (+) False LOC107196936
XM_015601229.2 mRNA upstream 56904 6117364 ~ 6123051 (+) False LOC107196936
XM_022680115.1 mRNA upstream 56904 6117364 ~ 6123051 (+) False LOC107196936
XM_022680652.1 mRNA downstream 89797 6289550 ~ 6293768 (+) True LOC103026554
XM_015601225.2 mRNA downstream 96433 6296186 ~ 6307328 (+) True tmprss3
XM_007241745.3 mRNA downstream 140242 6339995 ~ 6345403 (+) True wdr4
XM_007241746.3 mRNA downstream 140242 6339995 ~ 6345403 (+) False wdr4
XM_022680135.1 mRNA downstream 428853 6628606 ~ 6733187 (+) False ccdc148
TU223959 other upstream 33986 6144937 ~ 6145969 (+) True G165406
TU222840 other upstream 3686964 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 4341868 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 4345321 1822868 ~ 1834634 (+) False LOC103028062
TU222476 other upstream 4699221 1478706 ~ 1480734 (+) False LOC103047444
XR_002651330.1 other downstream 140242 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 140242 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 1185380 7385133 ~ 7429366 (+) False LOC103040759
XR_002651338.1 other downstream 1829642 8029395 ~ 8034584 (+) True LOC111194887
TU224843 other downstream 2838489 9038242 ~ 9078728 (+) False G166015

Expression Profile