RNA id: TU224008


Basic Information

Item Value
RNA id TU224008
length 244
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G165450
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6247265 ~ 6247508 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCATTCTGCCTGTCTTGAAACGTATCagattttaagaatataaaaaatcacaagaccataaaaaaacattattgcaccaacagctcatacaataaaaaaataaggcattaatatttatgttgtttgtgtagtgtgtaatcAGCATGGTGATCAGAATATAAGATTGTATCTTTGATTGCTGCTTTAGAATAATTTTGAGTGATATTGAAATggtgaaaatgtgtttaaaaatcatataactct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223990 lncRNA upstream 1625 6245251 ~ 6245640 (+) True G165432
TU223976 lncRNA upstream 3350 6243527 ~ 6243915 (+) True G165418
XR_002651309.1 lncRNA upstream 4049 6241844 ~ 6243216 (+) True LOC111188246
TU223984 lncRNA upstream 54849 6190802 ~ 6192416 (+) True G165426
TU223971 lncRNA upstream 56573 6190180 ~ 6190692 (+) True G165416
TU224036 lncRNA downstream 71811 6319319 ~ 6325758 (+) False G165469
TU224037 lncRNA downstream 71811 6319319 ~ 6324049 (+) True G165469
TU224044 lncRNA downstream 100495 6348003 ~ 6348651 (+) True G165474
TU224057 lncRNA downstream 141194 6388702 ~ 6388998 (+) True G165484
XR_002651333.1 lncRNA downstream 152986 6400494 ~ 6408768 (+) False LOC111194884
XM_022680117.1 mRNA upstream 47512 6179955 ~ 6199753 (+) True LOC111194881
XM_022680114.1 mRNA upstream 124214 6117364 ~ 6123051 (+) False LOC107196936
XM_022680652.1 mRNA downstream 42042 6289550 ~ 6293768 (+) True LOC103026554
XM_015601225.2 mRNA downstream 48678 6296186 ~ 6307328 (+) True tmprss3
XM_007241745.3 mRNA downstream 92487 6339995 ~ 6345403 (+) True wdr4
XM_007241746.3 mRNA downstream 92487 6339995 ~ 6345403 (+) False wdr4
XM_022680135.1 mRNA downstream 381098 6628606 ~ 6733187 (+) False ccdc148
TU223975 other upstream 9279 6160400 ~ 6237986 (+) False LOC111194881
TU223959 other upstream 101296 6144937 ~ 6145969 (+) True G165406
TU222840 other upstream 3754274 2490044 ~ 2492991 (+) True G164539
TU222580 other upstream 4409178 1834813 ~ 1838087 (+) False LOC103028062
TU222588 other upstream 4412631 1822868 ~ 1834634 (+) False LOC103028062
XR_002651330.1 other downstream 92487 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other downstream 92487 6339995 ~ 6345403 (+) False wdr4
TU224375 other downstream 1137625 7385133 ~ 7429366 (+) False LOC103040759
XR_002651338.1 other downstream 1781887 8029395 ~ 8034584 (+) True LOC111194887
TU224843 other downstream 2790734 9038242 ~ 9078728 (+) False G166015

Expression Profile