RNA id: TU224843


Basic Information

Item Value
RNA id TU224843
length 3244
RNA type TUCP
GC content 0.48
exon number 3
gene id G166015
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 9038242 ~ 9085850 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAACAGTCTcttctagtagagtctttggcgtaggccccgtcatcggcccaggacttgatacatctgggctctgcagatcctgtcgtacattggagacaggggcggagccaacccccgtgcaaccaaacgggaccaacctggaggcggtggggaaggaggaggggggagagagTAAGTGCATGAGAAAGACTGACATGGCACATGGTGTTTTGGATTTGCTTAAGAAATTCCCTCTGTGGCCTATGTGAGCCTCGtcaaacacagagagagcagaCCTGACAGTTTTACACTGCAGCAGATGGCAAACACTGCTTTCCTCTGTCCTCAGGCTGCAGGCGTGGCACAGCAACCccctctgcacacacacacacacacacagacacactctcatGCCATCACACTccctcgctcacacacacattcacattctTTCAGCCCTTTAGGACAACTGTGGGAAATCAATATGCCCAAAAACCACAGGGATTGGTTTCGCTTTGTTTTCAAACTAGGCCAGACTCAAAGTACCGTAAAATTTACTGTACCACCGGAGGGCAGGCAGCAATCTATTTCGGAAACCAACCCAAACGGAAAACTCGCAGCCAGTGTCTCAGCATTCACTCTGCTGGCACCAACCCCCCCTGTCCAGTCCGGTTCAGTCCAGTGGGGTGGGGGTTGGGTGGGTGGGGGTTTTAAGAGAGCCGTTCTGTAGCACcataatacacactaaaaaaagaaaatctatgAAAGCTAATTTTAAAGCCGCGCTGGACATGGAAATGCCATGTGAGTTATTGGAGGTTAATATGTTATCTGAGAGGCGAACTCGCAGAGGTCTCAACCGAGCCGAGCTTAGCCGAGTCGAGCCGAGCTGTTGAAGCTGTTCGGTTTTCATACAGAGCTTTTGTGGCCTACGCCGTTGCATTTGTTTACAATCGATCAAGCTTAATCAGCTGCTATTTCTGGATGCAGTCATTTTGAGCTGTTCAATGCTATACGCTcggagagagacaaagacagagagagagagagagagtgagtgtatgtgtgtgtgaatgactGACGGACAACAAGCAAGATCATATTTCACGAGCTAGCTGAGCAAATGTGAGCAGAATTCTCATTAAGCACAATCGCAAGCTCTAATCCCTGCATACCTGCTGAGCACCACTTGTACTAAATAGATCGCACCAGGTGGGAAATCTGCTGACAGGGCAAGCTTAGCACTCGCGCTCAACCTGTGCGCCCCTTGGCTTGCCTTCACACGACTGTATACACCCTCCCCGACAACCACCACGACCACAGCTACCACCAAAAGCCCTCCTCTCTCATGTCCTTCCCCTCCCCCTCCACCCCCCCGAGAGACTGTAGAGTAGCTAGGTAAAGCCTGACCCATCTCTGCATTGCAGGCATACATTCGCAAACCTGCGTTTATTTATAGGCCCTTAACCCACTTAATATCGCATTTGTCAATGTCAGGCCAGTGTCCTAATCTCGACCTCTGTCAGCACGTCATTAGTAACCACTTGTGTGCCCCCTCCACCCTTGCCCATCATACCACTCCACCCCATTTTTCCCCCGCACATAACTGGATGGGGAGAATTGGATGGGATGGGATGAGGTGGTGGAGGCGGAGGGGGGGGTCAAACGTGGGTGGGTGGGGCAGGCAGAGGTCTATCAGCTGCCAAGCTACCAGTGGCTACATCCCCttaacacacacaggcacacacacacacacacacactcatactcatCCACATAAACCACACAAACCGACCCTCTGTGGACACCCTGCAGACAGGAGACAAGGCCTCTCCACTACAGAGAATGCAGCTCCACAGGCTTATGAAGAAGATGGGGAAGGTGGGGTgttatagaaagagaaagagagagagagagagagagagtggggagGCAGCGGTagggaaagaaggaaagatTAATCATAATGAATACAAGTACATAGCACTGATGGTTCATTGTagataatgaagaaaaaaaaagaaaataataaaacgaGTACATAAAGCACCTTGTTCCATCTAGAAATTAGCTTATATGTTAGCCTATACATGTTAGCATAGCATACATACATCCCTTGGTGTTTAGCTGAACATTTAGCGCTTAGCTCAGTTTAGCATATATGAACTAAGCAGTCCCAGCATTTAGTGTACCGTAtttttacggactataaggcgcactgtattaTTACGGGTGAGGTAAGTGGGATGTGTTGGCgggtttattgtaaaaaaaaaacattgtctttcaaagtcaaacaagcgctggatgttaatctaaacagatttctttcctgaaaactgtttattttaaacgTGGCTTGTTTTAACTATGgaaaacatgcaggctacaatGTAGCCAACATAATCACCTCTGTGGCTAGTGGCTAATCCTAATATAATACTGCTCctgccttggtgctggagaaacttcactgaaactcctttataacactgtacttcatcAGAGTGGCTTttacatacataaggtgcaccggattataaggcgcactgttcattgtttttttggaaaattaaaggattttaagtgcgccttatagtgcaaaaaatacagtatgttagcCTGACTTAATGGAGGTGGGAACGTAGCCAAACTCAGTCAGACAGCAGCCCACACTGTGTTACACACTGGGCTCAAAGTTGGCACATATAGGCCCAGTGCTTACTGGGTAATTTACAGTGAACAGGAGGACACAATGCCTGTCTGCCTCTCACTGTCAAATTTAGCATCAATTTATGAGTTATGAAAGAAAGAATGATGGAAATGCAGGAGGGTGGGATACAAATGTGTCCTTGTCTTCTATTTTTTGTCAtgagctgtttttctttttaacatgctttttttgttgtaattgaGATTAGAAATTAAAATCGAAATCAAACTGGGACCGTAAGAttgattttatacacattttatacacGCAAAAATATAAGCATGCACGCCTCTCTCCAGCTTCGTCTCTCATTGTTGTGTAGCTCTGCTTGTTCCCTCCGCGGGTGACAGAGCACGTCTATTTCTGCAGGTCGATGGGGGGCTCCAGCTCTGGCCCGCCGGTGTACTGGCTGCAGTTGGGGTCGCCCCTCACCCGGGCCGAGGAGGGGATCTGGATGCCGGTGTAGGGGTTCACGCACCAGCACTCGCCTCGCTGCCCATGGGTGGACATGTGGCACTGGAACAcaagagggaggtagagagagtgggGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224825 lncRNA upstream 234797 8803183 ~ 8803445 (+) True G166003
TU224765 lncRNA upstream 561729 8475634 ~ 8476513 (+) True G165958
TU224749 lncRNA upstream 600890 8340549 ~ 8437352 (+) True G165942
TU224760 lncRNA upstream 617366 8419783 ~ 8420876 (+) True G165953
TU224649 lncRNA upstream 759638 8225363 ~ 8278604 (+) True G165882
TU224910 lncRNA downstream 206000 9284728 ~ 9285052 (+) True G166073
TU224914 lncRNA downstream 209244 9287972 ~ 9288253 (+) True G166077
TU224915 lncRNA downstream 209681 9288409 ~ 9288670 (+) True G166078
TU224925 lncRNA downstream 270631 9349359 ~ 9350193 (+) True G166086
TU224927 lncRNA downstream 288948 9367676 ~ 9370095 (+) True G166088
XM_022680177.1 mRNA upstream 380485 8298725 ~ 8657757 (+) True LOC103023018
XM_022680175.1 mRNA upstream 894987 8135058 ~ 8143255 (+) False LOC103039517
XM_022680174.1 mRNA upstream 894987 8135061 ~ 8143255 (+) True LOC103039517
XM_022680173.1 mRNA upstream 894987 8135065 ~ 8143255 (+) False LOC103039517
XM_007230451.2 mRNA upstream 894987 8135074 ~ 8143255 (+) False LOC103039517
XM_007256371.3 mRNA downstream 57891 9136619 ~ 9148577 (+) True LOC103024790
XM_007256372.2 mRNA downstream 244608 9323336 ~ 9331783 (+) True LOC103025110
XM_022680186.1 mRNA downstream 255548 9334276 ~ 9366222 (+) True lct
XM_022680187.1 mRNA downstream 255548 9334276 ~ 9366222 (+) False lct
XM_022680188.1 mRNA downstream 344335 9423063 ~ 9661794 (+) True hdac4
XR_002651338.1 other upstream 1003658 8029395 ~ 8034584 (+) True LOC111194887
TU224375 other upstream 1608876 7385133 ~ 7429366 (+) False LOC103040759
XR_002651330.1 other upstream 2692839 6339995 ~ 6345403 (+) False wdr4
XR_002651331.1 other upstream 2692839 6339995 ~ 6345403 (+) False wdr4
TU223975 other upstream 2800256 6160400 ~ 6237986 (+) False LOC111194881
TU224855 other downstream 58233 9136961 ~ 9148559 (+) False LOC103024790
TU225038 other downstream 749215 9827943 ~ 9837292 (+) True G166177
TU225193 other downstream 1348538 10427266 ~ 10429912 (+) True G166294
TU225396 other downstream 1595503 10674231 ~ 10678964 (+) False tas2r1
TU225678 other downstream 2161035 11239763 ~ 11242005 (+) False LOC111194895

Expression Profile