RNA id: TU224855


Basic Information

Item Value
RNA id TU224855
length 975
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC103024790
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 9136619 ~ 9148577 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCGCTTTCCCACCAAGTGCCTCTTGCAGTGCCACGGCATTTCACATTTCTTACGCACCGCAGCTTATGAGGAGAGTAGGAGCTTCACCTCAAAGTCTTCAACAGGTGGTATATCTATataaagggaaagaaagaggatTCTCAAGCTCAAGggTTGGATGGAGCCAAGTATTCTCCCTGTGACCGGCTTACGTTTGACAACGAGGTCTACAACCACTGCATACCGCTGTACAGGCAAAGAATGGCAACCAGCAACTACCAGCTGGAATGCCCTTGGCCCAACACTAAAGGGTATTATGTCCAACTGGACGACTGCGTGAAGAAAGCGATAACCCGCTCCTTCTGCGGAGAACCCTCTCTGAAGAACGATATCTTCCTGAAGCTCCATCAAACCTATTTCCCCCTCTGCTTCTTCATGCAGGACCCAGGCTTGCACGTCCTGCTGCTGCTCACGCTGCCCTGCATCATCATCACCTTCCTCATGCCCTTCTTCTGCGTGTGCCTCAAAGACTTCTGACTGTACCTCAGTTACTTCTGGACAAACCGAGTCGACAGGAAACCCACCCTGTTCTGGATTGGAAGATCTTTGGGGCtgtggagagaaaaacacctgGACAACTTATCAACTTCTCAGCGTTTCACCGAATGCattaaaatggacaaaaaaacaccaaacaatCTGTGAACTATGGGTTTTAGTTAGCTAGACTGTGGGCTGTCTTTGCAGTTAGAGCCTGTGCTGCCTTATGTGTTTGCCGTTTCTGAATAGAAGCACATTTTGAACCTTTGTGTGACTGAACTGTTCTGGAAAGGTAAACACAGTCATATTGAAAATTCAGGTCAGTCTAATTAGACCCTTCGAGGTCCCATTGCCGAACTCATCACACCGTATTTGTTTTTCACTGCATTAAAGAGTCCAagttttatatttgttatattagGAGTACTACTGAAATCTGTGACTGCTCTTCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224837 lncRNA upstream 69082 8980562 ~ 9067879 (+) False LOC103024476
TU224838 lncRNA upstream 69082 9042727 ~ 9067879 (+) False LOC103024476
TU224839 lncRNA upstream 69082 9042727 ~ 9067879 (+) False LOC103024476
TU224825 lncRNA upstream 333516 8803183 ~ 8803445 (+) True G166003
TU224765 lncRNA upstream 660448 8475634 ~ 8476513 (+) True G165958
TU224910 lncRNA downstream 136169 9284728 ~ 9285052 (+) True G166073
TU224914 lncRNA downstream 139413 9287972 ~ 9288253 (+) True G166077
TU224915 lncRNA downstream 139850 9288409 ~ 9288670 (+) True G166078
TU224925 lncRNA downstream 200800 9349359 ~ 9350193 (+) True G166086
TU224927 lncRNA downstream 219117 9367676 ~ 9370095 (+) True G166088
XM_007256370.3 mRNA upstream 69082 9053362 ~ 9067879 (+) True LOC103024476
XM_022680177.1 mRNA upstream 479204 8298725 ~ 8657757 (+) True LOC103023018
XM_022680174.1 mRNA upstream 993706 8135061 ~ 8143255 (+) True LOC103039517
XM_007256372.2 mRNA downstream 174777 9323336 ~ 9331783 (+) True LOC103025110
XM_022680186.1 mRNA downstream 185717 9334276 ~ 9366222 (+) True lct
XM_022680187.1 mRNA downstream 185717 9334276 ~ 9366222 (+) False lct
XM_022680188.1 mRNA downstream 274504 9423063 ~ 9661794 (+) True hdac4
XM_007256381.3 mRNA downstream 622057 9770616 ~ 9776408 (+) True LOC103027237
TU224842 other upstream 51111 9075320 ~ 9085850 (+) True G166015
TU224843 other upstream 58233 9038242 ~ 9078728 (+) False G166015
XR_002651338.1 other upstream 1102377 8029395 ~ 8034584 (+) True LOC111194887
TU224375 other upstream 1707595 7385133 ~ 7429366 (+) False LOC103040759
XR_002651330.1 other upstream 2791558 6339995 ~ 6345403 (+) False wdr4
TU225038 other downstream 679384 9827943 ~ 9837292 (+) True G166177
TU225193 other downstream 1278707 10427266 ~ 10429912 (+) True G166294
TU225396 other downstream 1525672 10674231 ~ 10678964 (+) False tas2r1
TU225678 other downstream 2091204 11239763 ~ 11242005 (+) False LOC111194895
XR_002651346.1 other downstream 2919870 12068429 ~ 12079343 (+) True prkag3

Expression Profile