RNA id: XM_007230408.3


Basic Information

Item Value
RNA id XM_007230408.3
length 3126
RNA type mRNA
GC content 0.58
exon number 6
gene id tbr1
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 660601 ~ 666804 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCATCTAGCTCAAATCTCGCGCGCGCACGCGCGTCTTAATTGCAATtgcagtttgtgtgtgtccctgtgtgtgtgtgcgtgcgtgcgttgtttaaaatctttctttttattatttatttaactcttaCGTTCCTCGAGCCATGCAGCTCGAGCAGTGCGTCTCGCCGGCGCTCGCGCTCTCCGACAAGTGCGCGCACGTGGGCAGCGGCGGACGCGCGAGCTCGCGAGGGTCCGATCTCGCGCATGCCATGATTACGCGCGCCGTCGACGGCGGCGACCTGGAGAGAAGGAGTTCACCTGTGAAAAAAAACTGCGGCGGGATGACGAATGAGTCCGAGGCGGACGCCTTCGCGGACTCTAAGGGCCCGGCGGGGGCCGCCCAGAGCGCCAAACTCTCTCCTGCCCTCGACGGCACGCCCGACATTCGCCACACCTTCGATGGCTGCGCGGCAGATCGCTGCCTCGCGCCTCCTCCGTCCAGCCACGCTCCACCACCGCCGCCACCACCACCGCCGCCGCCGCTCTCCGCGAGCCCCACGCCCATGTTCCCCTACGCCAGCCAGCACGGCGCGGCGCACGCCGCCTTCTCCATCGCCAGCCCGAGCCGCTACATGGCGCACCACCCGGTGATCGCCAACGGCGCCTACAACGGCCTGCTGAGCGGCGCGTCCCCGCAGGGCTATGCGGGCGCGGGCTACCCGTACGCCCAGCAGTACGGCCATGCGTACCAGGGCGCGCACTTCTACCAGTTCCCCTCGGCTCAGGCCGGCCTGGTACCGGGCAAGGCGCAGGTGTACCTGTGCAACCGCGCGCTCTGGCTCAAGTTTCACCGACACCAGACCGAGATGATCATCACCAAGCAGGGCCGGCGCATGTTTCCTTTTTTAAGCTTCAACATATCAGGGCTGGACCCAACTGCCCACTACAATATTTTTGTGGATGTGATTCTGGCTGACCCCAACCATTGGCGATTTCAGGGGGGCAAATGGGTCCCGTGCGGCAAAGCGGACACCAACGTCACAgGGAACAGAGTGTACATGCACCCAGACTCGCCCAACACTGGAGCGCACTGGATGCGGCAAGAGATTTCTTTCGGCAAACTAAAACTGACCAATAACAAGGGAGCAACCAACAACACAGGCCAGATGGTGGTGCTGCAGTCTCTGCATAAATACCAGCCCAGGCTGCACGTGGTGCAGGTGAATGAAGACGGAACCGAGGATACGAGCCAGCCGGGTCGCGTGCAAACCTTCACCTTCCCTGAGACCCAGTTCATCGCGGTCACAGCCTACCAGAACACAGACATCACACAGCTGAAAATAGACCACAATCCATTTGCAAAAGGATTTCGGGACAATTATGACACTGTCTACACAGGTTGCGACATCGACCGGTTGACGCCGTCCCCGGGCGCGTCCCCGCGCTCTCAGCTCATGCCCGGCGCCAGATACGCGATGACTGGCTCCTTCCTGCAGGAGCAGTTCGTGGGCTCGTACGCGGCGGCCAAGTCGCGCTTCCACGCGGGCGCGGGCGGCGCTGCTGGCGCGGATCGCGGCGTGCCACTCGCCAACAGCCTGCTGTCGCCGCAGCCAAGCGACGAGGCCGCGGTGGGCTCCCCGCAGCGCTGGTTCGTCGCCCCGGCCAACAACCACCGCCTGGACTTCGCCGCCGCCTCGGCGTACGACGCCGcggccgccgccgccgccgctgatCTGGCCGGCAACGCGGCCACGCTGCTGTCGTACGCGGCCGCCGGGGTCAAGCCGCTCCCGCTGGGCGCCGCGGCGGGCTGCTCCAACCGTGCGCTCGGCTACTACGGCGAGGCGCCGGCGTGGGGCGCGCGTACACCGCCCCAGTACTGCGGCGGCGGCACCACCACCATGGGCGCCACGTCCGTGGGCTCCACCGCGGGCACCACCACCAAGCCAGGCTCCGTGCTGTCCTGCTGGGGCAGAGCAGGCGCCTCCGGATACCTGCTCGGGCCTGATGACAGCGACGGCGCGGCGGCCCCCGACAGGTCCCCGCTGGGCGCCACGGACGAGGGCAGCAAGGCCAAGGAGCTGTCCGAGGCCGCGTGGATTGAACCACCCTCCTCCATCAAGTCCATCGACTCAAGCGACTCGGGCATCTTCGAGCAGGCCAAGCGACGGAGGATGTCCCCTTCGGCCACGCCGCTCTCCGAAACGTCGTCGCCGTTAAAGGCCGAGATCCTGGCGCCCAGGGAGTGCGAGAAGACTTGCCCCAAGGACATGGGTTACTACAGCTTCTACACCCACACTTAGGAGTCCTCGCGCACGACAGTCCAATGAACCCCATCAATATTGATCTATCTACTGATATTTGACCTAGGCTCTTTATTTGTTCTATTTATTTACGTCTCTACCATTTATAAAGCTAGTTTTATCAACATGTCCTCTTATTGTTCCCTATAGAAAGCTCTTTGCTCTTTTTAAATCGTTattaaaggtttataaaaaaataagaccttGTTGGCGAATAAGGGGGGATGAcgatataacaaaaatattgtacatACCTATCTAGACATCTCATTACCTGTTGTTGTACAGCAtgaaaaagaacagaaagtCTAGAATCGTTGTGCTTTTAGACAAGGTTGGTGAGGCCCAGCGTGGTTCTATCCCACAAAGACTGTTCTGAGGCCCAGACCACCAAACTTTGGGTAGTGAGTGGAGTAGAGACCAAACGGACCATTGCTCAGTATTGCTGTTGCTCTGTAGCCTCGCCGTGTCTCTTTGGGAAATCTATTAGTCTGTAGTTTCATTGTTGCTCTTAACGTATATCATTTCGTAGCCTGTATTTGTTGTAACGCTGTTGGTAGGCCAAACATTCatcaggaaaaaaatgaaactgaTGAAATTAAAAGCCTTGAAGTCCAAAGGCCAGAGGTGAATGATCTGTACAGGGCAGGCATCGTTTTCCTTCCTCCATCCTTCCACCGTGTGACCACCAATGACGTTTTTTGTGATTTAATGGGCGTTTCGTTACATATTCCAGCATCACGTCCATTGAGCCTGCTTAAAAGCTGATGTAATTGTGATGTGCTTCTTTGCAATAAATATAACGAGAGTATGAACCTCTTGACAAAACAACCTGCACGAGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG:

id description
K10174 TBR1; T-box brain protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222233 lncRNA upstream 140429 507845 ~ 520172 (+) True G164123
TU222223 lncRNA upstream 173862 485934 ~ 486739 (+) True G164118
TU222157 lncRNA upstream 485676 131108 ~ 174925 (+) True nostrin
TU222322 lncRNA downstream 35477 702281 ~ 716718 (+) True G164194
TU222402 lncRNA downstream 173077 839881 ~ 845477 (+) True G164253
TU222426 lncRNA downstream 277793 944597 ~ 944874 (+) True G164276
TU222432 lncRNA downstream 285261 952065 ~ 952429 (+) True G164282
TU222434 lncRNA downstream 322493 989297 ~ 989513 (+) True G164284
XM_007230403.3 mRNA upstream 33975 613090 ~ 626626 (+) True tank
XM_022680021.1 mRNA upstream 293753 184448 ~ 366848 (+) True tanc1
XM_022680019.1 mRNA upstream 487098 160759 ~ 173503 (+) False nostrin
XM_022680020.1 mRNA upstream 487098 160930 ~ 173503 (+) False nostrin
XM_022680018.1 mRNA upstream 503547 105214 ~ 157054 (+) True cers6
XM_007230404.3 mRNA downstream 8256 675060 ~ 750486 (+) False slc4a10
XM_007230407.3 mRNA downstream 8257 675061 ~ 750486 (+) False slc4a10
XM_007230405.3 mRNA downstream 20800 687604 ~ 750486 (+) True slc4a10
XM_022680044.1 mRNA downstream 737297 1404101 ~ 1496380 (+) True LOC103047444
XM_007233774.3 mRNA downstream 1052488 1719292 ~ 1724952 (+) True LOC103030276
TU222238 other upstream 88408 538279 ~ 572193 (+) True G164126
TU222476 other downstream 811902 1478706 ~ 1480734 (+) False LOC103047444
TU222588 other downstream 1156064 1822868 ~ 1834634 (+) False LOC103028062
TU222580 other downstream 1168009 1834813 ~ 1838087 (+) False LOC103028062
TU222840 other downstream 1823240 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 5478133 6144937 ~ 6145969 (+) True G165406

Expression Profile