RNA id: XM_007233770.3


Basic Information

Item Value
RNA id XM_007233770.3
length 1391
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC103029311
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1775451 ~ 1783041 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTCCGCCCACGCTGATGAATGCCCCGCCCATCGCTGGTGTTACAGGCGGGCTTGCTGTATGCAGTCAGTGTTAGATGaacacgctgctgctgctgttgaggAGATCGTAAACtcagttttctgtattttttattctgtatatttgtTTTCTCCGGCTGTACCGGACCGCCGCGCTCAGTATGAGCGACCCGGGGAGAGAGTTCACCGAGCGGGAGTCGCGTTCACGCTCCAGGAGTCTGAGTCCGAGAGGCTCTCGCAAATCCACCAGCCGCTCTCCTGCTCGCTCAAAGCAGGGCTCGCGCCACTCGCGCTCCAAATCACACTCACGCTCCAGGTCCAAGTCAGATTCCCGTTCCCATCGGAGCTCTCGGAGGCGTTATTCCCGTTCCCGCTCTCGGTCTCGCTCTCGCCGCCGCCGCTCTCGCAGCCGCTCGTACAGCGGGGAGTCAAGGCGCAGGCGGAGCCACAGCCACTCTCCAATGAGCAACCGCAGGCGACACATCGGAAACagggCGAACCCTGACCCCACCTGCTGTCTGGGTGTGTTTGGGCTGAGTCTGTACACGACAGAGAGAGACCTGCGGGAGGTTTTCTCCAAATACGGTCCTCTGGCCGACGTCTGCATCGTCTACGATCAGCAGTCTCGCCGCTCGCGAGGCTTCGCCTTCGTTTACTTCGAAAACAGAGAAGATTCACAGGAGGCCAAAGAGAGAGCCAATGGGATGGAGTTAGATGGACGCAGAATTCGGGTGGATTTCTCCATCACCAAGAGACCCCACACCCCCACCCCCGGCATCTACATGGGCCGACCCACATAtggtggtggtggtggtggcggcggcagtggtggaggtggaggaggaggaggtggaggaggccCCAGCATGAGTCGGCGTCGGGACTATGACCGAGGCTACGACCGTGGGTACGACAGAGGTTACGATCGCTATGAAAGCAGGGATTATTACAGCAGGTCTTACAGGAGAAGATCCCCGTCTCCGTACTACAACCGGGGAGCATACCGCTCCAGATCCCGCTCTCGCTCCTACTCTCCCCGTCACTACTGAAGATCAGACGTCCAAGTTTTGCCCTGAAGATGATAATGATGAcccttttttaatgtgtttcatAGCAATGAGTTCAGTCTCTTTTCAGCTCAGTGAAAGTCACTTTATGTAGCTGAGTTTAGGTTAAAACCATGAACCTGTTCAGTAtattttttgtactgtttttttccccttgttttaatttagtttgagCCGTTCTGTGATGTGCTGAGAGTCTGTGAAGGCTTTAGTGCCCCCCTGCCCTTCAAATCCATacctgtgtgtttttaaagttaaagttgatgatgatgatgttacaATAAATCCACTTTACACCACAAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222569 lncRNA upstream 14897 1759931 ~ 1760554 (+) False tspear
TU222562 lncRNA upstream 66810 1706881 ~ 1708641 (+) True G164376
TU222434 lncRNA upstream 785938 989297 ~ 989513 (+) True G164284
TU222432 lncRNA upstream 823022 952065 ~ 952429 (+) True G164282
TU222426 lncRNA upstream 830577 944597 ~ 944874 (+) True G164276
TU222579 lncRNA downstream 19746 1802787 ~ 1838087 (+) True LOC103028062
TU222581 lncRNA downstream 19746 1802787 ~ 1838087 (+) False LOC103028062
TU222597 lncRNA downstream 93403 1876444 ~ 1877085 (+) True G164400
TU222607 lncRNA downstream 120025 1903066 ~ 1906873 (+) True G164404
TU222720 lncRNA downstream 332802 2115843 ~ 2118502 (+) True G164475
XM_022680046.1 mRNA upstream 14891 1744406 ~ 1760560 (+) True tspear
XM_007233774.3 mRNA upstream 50499 1719292 ~ 1724952 (+) True LOC103030276
XM_022680044.1 mRNA upstream 279071 1404101 ~ 1496380 (+) True LOC103047444
XM_007230404.3 mRNA upstream 1024965 675060 ~ 750486 (+) False slc4a10
XM_022680049.1 mRNA downstream 837 1783878 ~ 1796747 (+) False LOC103028997
XM_022680047.1 mRNA downstream 839 1783880 ~ 1796747 (+) True LOC103028997
XM_022680052.1 mRNA downstream 23354 1806395 ~ 1822220 (+) True ehhadh
XM_022680650.1 mRNA downstream 39797 1822838 ~ 1836753 (+) False LOC103028062
XM_022680053.1 mRNA downstream 87445 1870486 ~ 1878855 (+) True nup35
TU222476 other upstream 294717 1478706 ~ 1480734 (+) False LOC103047444
TU222238 other upstream 1203258 538279 ~ 572193 (+) True G164126
TU222588 other downstream 39827 1822868 ~ 1834634 (+) False LOC103028062
TU222580 other downstream 51772 1834813 ~ 1838087 (+) False LOC103028062
TU222840 other downstream 707003 2490044 ~ 2492991 (+) True G164539
TU223959 other downstream 4361896 6144937 ~ 6145969 (+) True G165406
TU223975 other downstream 4377359 6160400 ~ 6237986 (+) False LOC111194881

Expression Profile